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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
ONIVA05G02220.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
MYB |
Protein Properties |
Length: 311aa MW: 34017.1 Da PI: 5.9504 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
ONIVA05G02220.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 61.2 | 2.2e-19 | 30 | 77 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT eEd llvd+++ +G g+W++ ar+ g++Rt+k+c++rw++yl
ONIVA05G02220.1 30 RGPWTVEEDMLLVDYIANHGEGRWNSLARCAGLRRTGKSCRLRWLNYL 77
89********************************************97 PP
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2 | Myb_DNA-binding | 51.1 | 3.2e-16 | 83 | 126 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+ T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
ONIVA05G02220.1 83 RGNITADEQLLILDLHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 126
7999******************.*********.***********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 311 aa
Download sequence Send
to blast |
MEMMRMAMSP AMSSATAAAA ASEDEGDLRR GPWTVEEDML LVDYIANHGE GRWNSLARCA 60 GLRRTGKSCR LRWLNYLRPD VRRGNITADE QLLILDLHSR WGNRWSKIAQ YLPGRTDNEI 120 KNYWRTRVQK HAKQLRCDVN SKEFRDVVRH VWMPRLVERI QADAAAAGEV AAPAPVSAAA 180 TRSMSSPAGA MYLHHQQIPL AAGAMVVAPA VSSEAYHHHG CGGGGDTSCS EPSQAAVTMS 240 PDDASSTLRS SSAAAENDTI HGDVLSGSWS ELLATTTTTI AATAGLPDFD ELGDFEDNLW 300 SLEDIWLHQQ C
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC118288 | 0.0 | AC118288.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0077L08, complete sequence. |
GenBank | AK243659 | 0.0 | AK243659.1 Oryza sativa Japonica Group cDNA, clone: J100089B08, full insert sequence. |
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |