PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G27660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 711aa MW: 80046.9 Da PI: 5.1819 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.4 | 3.9e-06 | 116 | 138 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C +f + G C GdrC F Hgp ONIVA04G27660.1 116 VPCYYFKK-GNCLKGDRCAFYHGP 138 689*9999.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.953 | 31 | 60 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0064 | 32 | 59 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 1.9E-11 | 33 | 88 | No hit | No description |
PROSITE profile | PS50103 | 10.991 | 62 | 88 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.45 | 64 | 87 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.502 | 112 | 139 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.2E-5 | 113 | 138 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.77E-5 | 113 | 137 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 1.5 | 117 | 137 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 7.3E-5 | 117 | 139 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 711 aa Download sequence Send to blast |
MEADGAAAAA AAGEASTEAG ARPLAPEEEA LRRNTDCVYF LASPLTCKKG NECDFRHSDN 60 ARMNPRDCWY WLNSNCLNPK CPFRHPPIDG MFGAPTTGMP AVSSHYAPFN SGKQLVPCYY 120 FKKGNCLKGD RCAFYHGPQS VGNNPSEQVV KVSSLPLEQL QTQKNDLLGI KDSVQSTNSI 180 QHGAPITNER GKTAIDRSTV NSARTATVAI PVASNAMSCP KSEKVKSSTP AALKESFTTS 240 SGGDHPECYQ NHFPMDSDPV RDWNQSYEMP PADDLPQNSR EADELLGESS PGFDVLVDND 300 ADGAAYLHDE DFGGDMYPVE DYEYAPADFD VCAHHERERF NGMDEQDQMG HMYDGYERKR 360 RRSSERSMER PFHSERRFLQ RDRDRVEMDG SDLRHRLRRR RINESSLAIS PERNGEQQRR 420 DERYRERAHG HRSHRDHHQS SRGSTLSSRL QGRIKLPGRS PDRVDTRSEK ERDRRRLRDR 480 LSPVRRTEFQ GTRHREAGQH EEQTQRRSSE LALGSRNADG QHLTKDVPDS HNFPHRKNLR 540 DSSKANGSVE PEASLDFEGP KPLSVILQRK REAAWANGTS ACSPKQDKSA EVSHRQASLA 600 EAEKEGDNII SSDEYKSGSG DEEFRDEGHI PVEGHGQSSS HGDKLEAEDI IEVDPVENQD 660 ADNYDQREGE SYYEPIGGQD YKSDDENAYE DDDEEYDDDD DFARKVGVVF S |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 357 | 361 | RKRRR |
2 | 357 | 362 | RKRRRS |
3 | 473 | 480 | RRRLRDRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070857 | 0.0 | AK070857.1 Oryza sativa Japonica Group cDNA clone:J023066C11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636581.1 | 0.0 | zinc finger CCCH domain-containing protein 32 | ||||
Swissprot | Q0J952 | 0.0 | C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A0E0H798 | 0.0 | A0A0E0H798_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA04G27660.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6604 | 32 | 41 |
Publications ? help Back to Top | |||
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