PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G25750.4

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 486aa MW: 53449.2 Da PI: 6.6047

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G25750.4	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.6	8.7e-11	241	271	4	34
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 k err+++NReAAr+sR+RKka++++Le+ ONIVA04G25750.4 241 AKTERRLAQNREAARKSRLRKKAYVQNLETS 271 799*************************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.0E-6	238	314	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.278	240	284	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.9E-8	241	272	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.3E-7	242	286	No hit	No description
CDD	cd14708	1.83E-21	242	294	No hit	No description
SuperFamily	SSF57959	6.12E-7	242	285	No hit	No description
PROSITE pattern	PS00036	0	245	260	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.4E-29	323	397	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence Send to blast
MKGGYKEWIE LVVIMVQGEE SSWRMAASTH HERAIPLNQA LAYGVQAHAS PSVAAAPPAS 60 FLDFQPAAAA AAYFGELEEA LIHGANAGGV VDPGMIRADV HSKSAAAAAT AGYLAARPPT 120 LEIFPSWPMR QQQQLHSGNS QSVGSTTDSS SAQNTMPQME LVSPASIRAS SEHQHQQQQP 180 GQEVMMVTTD DYSYKPGLAA ASPSFQQQHQ LQHHQQQQLH GGDHDKRKHG STRKDGKSVD 240 AKTERRLAQN REAARKSRLR KKAYVQNLET SRVRLQQIEQ ELQRARSQGL FLGGCRAAGD 300 MSSGAAMFDM EYARWLDDDS KRLTDLRGGL QAHLLDTNLG LIVEECMQHY DELFQLKAAL 360 ARSDVFHLLT GTWATPAERC FLWMGGFRPS DLLKILIQQL DPLTEQQMLG IYSLQQSSEQ 420 AEEALAQGLQ QLHQSLADTV AAGTLNDGPG VPNYMSLMAI ALDKLASLES FYQQVRQQLS 480 IVIPFR

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence Send to blast

MKGGYKEWIE LVVIMVQGEE SSWRMAASTH HERAIPLNQA LAYGVQAHAS PSVAAAPPAS  60
FLDFQPAAAA AAYFGELEEA LIHGANAGGV VDPGMIRADV HSKSAAAAAT AGYLAARPPT  120
LEIFPSWPMR QQQQLHSGNS QSVGSTTDSS SAQNTMPQME LVSPASIRAS SEHQHQQQQP  180
GQEVMMVTTD DYSYKPGLAA ASPSFQQQHQ LQHHQQQQLH GGDHDKRKHG STRKDGKSVD  240
AKTERRLAQN REAARKSRLR KKAYVQNLET SRVRLQQIEQ ELQRARSQGL FLGGCRAAGD  300
MSSGAAMFDM EYARWLDDDS KRLTDLRGGL QAHLLDTNLG LIVEECMQHY DELFQLKAAL  360
ARSDVFHLLT GTWATPAERC FLWMGGFRPS DLLKILIQQL DPLTEQQMLG IYSLQQSSEQ  420
AEEALAQGLQ QLHQSLADTV AAGTLNDGPG VPNYMSLMAI ALDKLASLES FYQQVRQQLS  480
IVIPFR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250\|UniProtKB:Q7X993, ECO:0000269\|PubMed:22353606}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101338	0.0	AK101338.1 Oryza sativa Japonica Group cDNA clone:J033034J12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616943.1	0.0	transcription factor LG2 isoform X2
Swissprot	Q5N7C7	0.0	LG2_ORYSJ; Transcription factor LG2
TrEMBL	A0A0E0H6L0	0.0	A0A0E0H6L0_ORYNI; Uncharacterized protein
STRING	OMERI01G34450.1	0.0	(Oryza meridionalis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	4e-94	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]