PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G24570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 311aa MW: 33636.5 Da PI: 6.9621 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165 | 2.7e-51 | 11 | 154 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhP+deelvv+yL +k++g + ++ +vd++k+ePw+Lp +++ + +ewyfFs +d+kyatg+r+nrat+sgyWka ONIVA04G24570.1 11 LPPGFRFHPRDEELVVDYLYHKLSGGGgagageF---YggvAMVDVDLNKCEPWELPDAARVGATEWYFFSLHDRKYATGQRTNRATRSGYWKA 101 79**********************9997665442...144369**************8888899****************************** PP NAM 86 tgkdkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128 tgkd++++++ +ge+vg++ktLvfy+grap+g+kt+Wvmhe+r+ ONIVA04G24570.1 102 TGKDRAIVTRrraaggeavaGGEVVGMRKTLVFYQGRAPRGSKTEWVMHEFRV 154 *********977877777776677***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-56 | 3 | 187 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.291 | 11 | 187 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-26 | 12 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MSLISMMEAN LPPGFRFHPR DEELVVDYLY HKLSGGGGAG AGEFYGGVAM VDVDLNKCEP 60 WELPDAARVG ATEWYFFSLH DRKYATGQRT NRATRSGYWK ATGKDRAIVT RRRAAGGEAV 120 AGGEVVGMRK TLVFYQGRAP RGSKTEWVMH EFRVDGHAVA DHPSSSTSSS SSNLLKEDWV 180 LCRVFYKSRT ANPRPVVSGE AAVSLSGELS LPPPPPLPVA PAVVDGYTGG GYYEQDSSAG 240 CHHHHHRPPT SAALPFKDLT DFRDLLSNMV QGGGGAAAAA KSEGFHLGWS EEESSGYVQQ 300 SAMASQAWNP F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-46 | 6 | 192 | 12 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-46 | 6 | 192 | 12 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-46 | 6 | 192 | 12 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-46 | 6 | 192 | 12 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-46 | 6 | 192 | 15 | 173 | NAC domain-containing protein 19 |
3swm_B | 4e-46 | 6 | 192 | 15 | 173 | NAC domain-containing protein 19 |
3swm_C | 4e-46 | 6 | 192 | 15 | 173 | NAC domain-containing protein 19 |
3swm_D | 4e-46 | 6 | 192 | 15 | 173 | NAC domain-containing protein 19 |
3swp_A | 4e-46 | 6 | 192 | 15 | 173 | NAC domain-containing protein 19 |
3swp_B | 4e-46 | 6 | 192 | 15 | 173 | NAC domain-containing protein 19 |
3swp_C | 4e-46 | 6 | 192 | 15 | 173 | NAC domain-containing protein 19 |
3swp_D | 4e-46 | 6 | 192 | 15 | 173 | NAC domain-containing protein 19 |
4dul_A | 3e-46 | 6 | 192 | 12 | 170 | NAC domain-containing protein 19 |
4dul_B | 3e-46 | 6 | 192 | 12 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT837668 | 0.0 | CT837668.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124G03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633392.1 | 1e-171 | NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0E0H628 | 0.0 | A0A0E0H628_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA04G24570.2 | 1e-174 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12977.1 | 8e-66 | NAC family protein |