PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G21750.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 1258aa MW: 136894 Da PI: 6.7117

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G21750.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.5	3.5e-06	1238	1257	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +Cr ++++G+C+ G +C+F H ONIVA04G21750.1 1238 ICR-YYENGYCRKGTSCQFLH 1257 799.6666************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00719	2.1E-37	67	163	IPR004343	Plus-3 domain
PROSITE profile	PS51360	15.493	67	186	IPR004343	Plus-3 domain
SuperFamily	SSF159042	1.19E-23	67	179	IPR004343	Plus-3 domain
Pfam	PF03126	2.4E-12	72	151	IPR004343	Plus-3 domain
SuperFamily	SSF55277	1.96E-14	314	372	IPR003169	GYF domain
PROSITE profile	PS50829	14.216	317	369	IPR003169	GYF domain
SMART	SM00444	6.0E-12	318	371	IPR003169	GYF domain
Gene3D	G3DSA:3.30.1490.40	8.6E-15	319	372	IPR003169	GYF domain
Pfam	PF02213	5.9E-9	320	361	IPR003169	GYF domain
PROSITE profile	PS50103	13.732	1233	1258	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-5	1236	1257	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.8E-5	1238	1257	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0034968	Biological Process	histone lysine methylation
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1258 aa Download sequence Send to blast
MLKLLEMHFH AKETVNGDGQ KGIDSDSAQI DSGGYSDMPS KLCSDNKRKI HKKIERESPA 60 NLEDYAAIDM HNINLIYLRR SLLEDLIDDN GTFSDKITGA FVRIRTPCVG QKQDIYRLVK 120 VLGTHKVAER YSVGKKTTDH ALEILNLDKK EEECKRLRQS MKCGLITRLK VGDIHEKAKI 180 FQLLRVNDWL ENEKQRLSHL RDRAKKLQLL GTPEERARII NEDPEVHADP CMSPDYESAE 240 ELDAKKAVDS TSRNGSDLLF LGRKGIETNS LQNHRQNCSA TSHHTTTSPP TEGMTHGQGE 300 EASFASSEIV SGDMEPEKVW HYKDPSGSVQ GPFTLLQLSK WAAYFPRDLR IWLTFESEQN 360 SLLLNEVLSK QQKDFIQPSP KVDNNRSTWE GVGQDRVDSS LTGNNSSSPI GYNVIYSSRL 420 PSPSADYRAS AREGPNLPSG TLPFMTSQKT QKDPQMLHGQ AQHQGDYSCT IPSSVVSYRP 480 AGSHDEWPPR GNIGEWNNSQ DSGGMWSPTT PHMSRSNLEH QPDRCITKKQ LQNDSKRNTL 540 AGSAENLNSQ MDFGSQKVHI PTPQQPERDL ATSVGTSRQF EFKTCHQEGS HWSSTADSIT 600 HDGLQLSLAS AKPESCSAVN PIRDGDSSSA SRVPNQSGAH VYSPPHPATT NLSKSEETMN 660 QCKSCEPEAS NKSRKPDASH APVNQHPKPE SDPVLPDTQD FERTHPSPST EHDTKEQLKD 720 QSRSTSVAPE GSGTKAHGQS SIAFISEASG PLSSKIVGLQ PPKDTSFLVE RDIKDGGSIT 780 QTEQQKEEST AFKKENVAVD PISDSEAIVS GVLESLTETY NLHEETALEN FTPTSAEEEQ 840 PQCSTPIALS PWDETSDYQG EAVDSALWGV QDDQNNEMWS LSSPTPTLQP SGIGADTKGA 900 SCAIEEVIVA QGNSGVVEPS PALEKKRIEK VPSASIDRGV PEQVKPKSDA ALSPEESRKP 960 SGLQLSSTYL QGSTKSSGLP PSGTSLDGGI EPSGLLPSGT SLEWGTKISG VQSSASSLEG 1020 SKKAFVRQPS GSSLEGNTKA SGRQPSGSSI EGSKKPSDRQ PSGASQEGNT KPSGWQQSVS 1080 SLEGGTKPSG WKPSISIDTN TKASGSSKAS GWQPSPRESS KSKPNSTWGA GQSRNSSSHQ 1140 STTPTAKYSS ETPRRQGNNN TNSAGWGDSL GNKSWHSPSG NASSRGSHSS HHHDRHNQSS 1200 EPWRGGSNHS RRSDHRQEHG NGGSSRSSSS RGQSQRGICR YYENGYCRKG TSCQFLHR

Sequence ? help Back to Top

Protein Sequence Length: 1258 aa Download sequence Send to blast

MLKLLEMHFH AKETVNGDGQ KGIDSDSAQI DSGGYSDMPS KLCSDNKRKI HKKIERESPA  60
NLEDYAAIDM HNINLIYLRR SLLEDLIDDN GTFSDKITGA FVRIRTPCVG QKQDIYRLVK  120
VLGTHKVAER YSVGKKTTDH ALEILNLDKK EEECKRLRQS MKCGLITRLK VGDIHEKAKI  180
FQLLRVNDWL ENEKQRLSHL RDRAKKLQLL GTPEERARII NEDPEVHADP CMSPDYESAE  240
ELDAKKAVDS TSRNGSDLLF LGRKGIETNS LQNHRQNCSA TSHHTTTSPP TEGMTHGQGE  300
EASFASSEIV SGDMEPEKVW HYKDPSGSVQ GPFTLLQLSK WAAYFPRDLR IWLTFESEQN  360
SLLLNEVLSK QQKDFIQPSP KVDNNRSTWE GVGQDRVDSS LTGNNSSSPI GYNVIYSSRL  420
PSPSADYRAS AREGPNLPSG TLPFMTSQKT QKDPQMLHGQ AQHQGDYSCT IPSSVVSYRP  480
AGSHDEWPPR GNIGEWNNSQ DSGGMWSPTT PHMSRSNLEH QPDRCITKKQ LQNDSKRNTL  540
AGSAENLNSQ MDFGSQKVHI PTPQQPERDL ATSVGTSRQF EFKTCHQEGS HWSSTADSIT  600
HDGLQLSLAS AKPESCSAVN PIRDGDSSSA SRVPNQSGAH VYSPPHPATT NLSKSEETMN  660
QCKSCEPEAS NKSRKPDASH APVNQHPKPE SDPVLPDTQD FERTHPSPST EHDTKEQLKD  720
QSRSTSVAPE GSGTKAHGQS SIAFISEASG PLSSKIVGLQ PPKDTSFLVE RDIKDGGSIT  780
QTEQQKEEST AFKKENVAVD PISDSEAIVS GVLESLTETY NLHEETALEN FTPTSAEEEQ  840
PQCSTPIALS PWDETSDYQG EAVDSALWGV QDDQNNEMWS LSSPTPTLQP SGIGADTKGA  900
SCAIEEVIVA QGNSGVVEPS PALEKKRIEK VPSASIDRGV PEQVKPKSDA ALSPEESRKP  960
SGLQLSSTYL QGSTKSSGLP PSGTSLDGGI EPSGLLPSGT SLEWGTKISG VQSSASSLEG  1020
SKKAFVRQPS GSSLEGNTKA SGRQPSGSSI EGSKKPSDRQ PSGASQEGNT KPSGWQQSVS  1080
SLEGGTKPSG WKPSISIDTN TKASGSSKAS GWQPSPRESS KSKPNSTWGA GQSRNSSSHQ  1140
STTPTAKYSS ETPRRQGNNN TNSAGWGDSL GNKSWHSPSG NASSRGSHSS HHHDRHNQSS  1200
EPWRGGSNHS RRSDHRQEHG NGGSSRSSSS RGQSQRGICR YYENGYCRKG TSCQFLHR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012618	0.0	CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015614387.1	0.0	zinc finger CCCH domain-containing protein 19 isoform X2
TrEMBL	A0A0E0H4Z5	0.0	A0A0E0H4Z5_ORYNI; Uncharacterized protein
STRING	OPUNC10G14000.1	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51120.1	2e-69	DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding