PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G21490.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 309aa    MW: 32487 Da    PI: 8.8229
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G21490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY77.83.3e-2454105455
            YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasq 55 
                      +s  eq+Cyv+C +C+t+l+vsvPs+slfk+vtvrCGhC+sll+vn++    
  ONIVA04G21490.1  54 DSEQEQLCYVHCHYCDTVLVVSVPSSSLFKTVTVRCGHCSSLLTVNMRGLLL 105
                      56789***************************************99987664 PP
2YABBY132.45.9e-41195263104170
            YABBY 104 nedeevprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                        +e +pr+    ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
  ONIVA04G21490.1 195 AAKEPSPRTNTavINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 263
                      445556665554489****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.1E-6156263IPR006780YABBY protein
SuperFamilySSF470957.99E-8205256IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.7E-4212255IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MSSSSSSSAS SAAAAAFRPA VVQREQQVVE EKFPAAAAAM REMVLPPVAA AAADSEQEQL  60
CYVHCHYCDT VLVVSVPSSS LFKTVTVRCG HCSSLLTVNM RGLLLPTTAA AAPPPPPPPP  120
PPAAHFPHSL NLAPANPPHH HSLLDEISTA NSPTQLLLEQ HGLGGLMASA ASCRNNNSPA  180
AAAALPPPTS QGKAAAKEPS PRTNTAVINR PPEKRQRVPS AYNRFIKDEI QRIKAGNPDI  240
SHREAFSAAA KNWAHFPHIH FGLMPDHQGL KKTSLLPQDH QRKDGLLKEG LYAAAAAAAA  300
AANMGVAPY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740150.0AB274015.1 Oryza sativa Japonica Group OsYABBY3 mRNA for OsYABBY3 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613818.11e-171protein YABBY 3 isoform X1
SwissprotQ8L5561e-172YAB3_ORYSJ; Protein YABBY 3
TrEMBLA0A0E0H4V10.0A0A0E0H4V1_ORYNI; Uncharacterized protein
STRINGONIVA04G21490.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-44YABBY family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]