PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G19250.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 570aa    MW: 59674.9 Da    PI: 5.4434
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G19250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.1e-05124141219
                      EETTTTEEESSHHHHHHH CS
          zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                      +C++Cgk F++++++  H
  ONIVA04G19250.1 124 VCKNCGKEFTSWEHFLEH 141
                      7**************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.5363557IPR007087Zinc finger, C2H2
SMARTSM003550.963557IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.22E-63557No hitNo description
PfamPF139120.00473657IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
SuperFamilySSF576672.22E-6118142No hitNo description
SMARTSM00355140123143IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.141123150IPR007087Zinc finger, C2H2
SuperFamilySSF576678.28E-8281304No hitNo description
PfamPF139123.2E-9282306IPR007087Zinc finger, C2H2
SMARTSM003550.13282304IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.242282309IPR007087Zinc finger, C2H2
PROSITE patternPS000280284304IPR007087Zinc finger, C2H2
SuperFamilySSF576678.28E-8390417No hitNo description
PfamPF139124.8E-11395418IPR007087Zinc finger, C2H2
SMARTSM003553.7395417IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.182395417IPR007087Zinc finger, C2H2
PROSITE patternPS000280397417IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MCESSPSLHH GQMQPSPSSP RAPPPTAAQA SGYKHFCRVC NKGFTCGSAL GGHMRAHGVG  60
DGDGLGADDD DDDDDDSLGD EAVRRARGGA DDPWNAGGPS SSGAATHVYE LRTNPNRVTR  120
SRQVCKNCGK EFTSWEHFLE HGKCSSGEDD DDEDDVDRSL QPWSPSPEAD GEEDPAPAAG  180
WLKGKRSRRC KGTGVDLSPT PSACTAGEEE DLANCLVMLS SSKVDQAGVT EAEQPSSSSA  240
SKEHKRLITF MEPTTYVLDT VMALPPPAPA PQYVSTVPRG MFECKACKKV FSSHQALGGH  300
RASHKKVKGC FAAKLESNAA EVAEPSHHAE VADRSEDNPA KATSDARRNV HASMDGDGNA  360
GTSDAAAELS MAIVPIEPPV AALAAAPLKK KGKMHECSVC HRLFTSGQAL GGHKRCHWLT  420
SSSADHTASV PPLADDLVPL SFRPMLDAPE PALDLSIAAN PPLLASAATV RPKVGGSSFH  480
LDAPPPVYIP SSPAIPSQRN KATTTTGSQN ANDAVGLSTA AAEDEADSTT VKRARLSDLK  540
DVSMAGETTP WLQVGIGSSS RGGADDNDKE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1387393LKKKGKM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00621PBMTransfer from AT2G17180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634601.10.0uncharacterized protein LOC4336604
TrEMBLA0A0E0H3Z20.0A0A0E0H3Z2_ORYNI; Uncharacterized protein
TrEMBLB8ASU90.0B8ASU9_ORYSI; Uncharacterized protein
STRINGONIVA04G19250.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.17e-21C2H2-like zinc finger protein