PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G19040.1 | ||||||||
Common Name | DREB4-2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 284aa MW: 29560.2 Da PI: 5.203 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.7 | 3.4e-19 | 116 | 166 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr+++ +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g ONIVA04G19040.1 116 PSYRGVRRRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 166 57*****887.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.6E-13 | 116 | 166 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.86E-32 | 116 | 176 | No hit | No description |
PROSITE profile | PS51032 | 24.289 | 117 | 174 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-33 | 117 | 176 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-22 | 117 | 176 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.0E-38 | 117 | 180 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-11 | 118 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-11 | 140 | 156 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MEADASHTPT TSSSVSVSFS SSSLSTSSST SSLVDNGAQD RPKSSKPKHA AKKRKRAAAE 60 EPANAAHGAG EDTSSCSTDD NAAASGKAQA GGGGGGVDSS STCTAASAPR SGFKHPSYRG 120 VRRRSWGKWV SEIREPRKKS RIWLGTFPTA EMAARAHDVA ALAIKGRNAH LNFPDSAHEL 180 PRPASTSPAD IQAAAAKAAA EVRCEEESSP SSSPTAEQPE EEAACPDTVH ADGGQDNALF 240 DLPDLLLDLR DGLWWSPVWP AALAAEEYDG GDAVVLNEPL LWAE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-18 | 112 | 174 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 46 | 54 | PKHAAKKRK |
2 | 50 | 56 | AKKRKRA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | KM576130 | 0.0 | KM576130.1 Oryza nivara dehydration responsive element binding protein 4-2 (DREB4-2) gene, promoter region and complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635762.1 | 0.0 | ethylene-responsive transcription factor ERF038 | ||||
Swissprot | Q8LBQ7 | 2e-46 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
Swissprot | Q9ZQP3 | 2e-47 | ERF38_ARATH; Ethylene-responsive transcription factor ERF038 | ||||
TrEMBL | A0A0E0H3W9 | 0.0 | A0A0E0H3W9_ORYNI; Dehydration responsive element binding protein 4-2 | ||||
TrEMBL | A2XW65 | 0.0 | A2XW65_ORYSI; Dehydration responsive element binding protein 4-2 | ||||
TrEMBL | Q01ID8 | 0.0 | Q01ID8_ORYSA; OSIGBa0134H18.4 protein | ||||
STRING | ONIVA04G19040.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 8e-43 | ERF family protein |
Publications ? help Back to Top | |||
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