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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
ONIVA04G17990.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
MYB |
Protein Properties |
Length: 310aa MW: 33252.1 Da PI: 7.0209 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
ONIVA04G17990.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 49.6 | 9.1e-16 | 14 | 73 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT............TTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg............kgRtlkqcksrwqkyl 48
+g+WT++Ed+llvd+v+ G+g+W++ ++ g ++R++k+c++rw +yl
ONIVA04G17990.1 14 KGPWTPDEDKLLVDYVQANGSGNWRLLPKLAGearvrdrwvragLNRCGKSCRLRWTNYL 73
79********************************************************97 PP
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2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 79 | 122 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg++T+eE++ ++++++ G++ W+ Ia+ ++ gRt++++k++w++
ONIVA04G17990.1 79 RGPFTPEEHKSILQLHAIVGNK-WSMIAAQLP-GRTDNEIKNYWNT 122
89********************.*********.***********97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 310 aa
Download sequence Send
to blast |
MGRTPCCDSK VLKKGPWTPD EDKLLVDYVQ ANGSGNWRLL PKLAGEARVR DRWVRAGLNR 60 CGKSCRLRWT NYLRPDIKRG PFTPEEHKSI LQLHAIVGNK WSMIAAQLPG RTDNEIKNYW 120 NTNVKKQLRQ GQAAAVGEQA ALASLGGGAA SCPAARHMAQ WETARLEAEA RLSLLSGTTS 180 VATASVAASS SSSSTAAAGG AEAPPDIYLR LWNSEVGDSF RKSARSAARE DQEPANASDE 240 AAPVSATFAR PGDDSSAASN VTAAAAADEY QVFLDLAAED FELFHGRHGG FPLFPAVDML 300 GETSLYTAFD
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AL663006 | 0.0 | AL663006.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039L24, complete sequence. |
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |