PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G17660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 466aa MW: 49732.2 Da PI: 8.9543 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 4.8e-19 | 214 | 264 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++ + kl+ge ONIVA04G17660.1 214 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 264 59******9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.07E-32 | 213 | 272 | No hit | No description |
SuperFamily | SSF54171 | 4.25E-23 | 214 | 273 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.998 | 214 | 271 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-38 | 214 | 277 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-32 | 214 | 272 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.8E-12 | 215 | 264 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-11 | 215 | 226 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-11 | 237 | 253 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:2000070 | Biological Process | regulation of response to water deprivation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MDAPSGESGG GGGGGGGRRW KGKGVTPIQP RRQLGTVLED SSAALLRPLK KIGRSPDRLL 60 RSASSLSTSS SAPPSPRSSS ASDAPVRVIS SSPSSPSPPS ARHIFPFAYE ASTTTVGGSP 120 RLHPLSWQQS SMSQPASPQQ QQQQPLQHQQ MISFGASPPC STTQFVVPEN AQQQQMLLRY 180 WSEALNLSPR GGPGGVPPWL YQQLLRVPPP PQKLYRGVRQ RHWGKWVAEI RLPRNRTRLW 240 LGTFDTAEDA AMAYDREAFK LRGENARLNF PDRFLGKGRA GGSGRTSVSS SAAAAASCSS 300 SSPSPPETPD DANTQQQAPQ QREQRDTAGV SMGKKQPQPP APTSRQEGCS GGDAAAPYPA 360 EMLHAPAACG GMWVAPDESW FSTWGPGSSF WDDYDMDSAR GLFLHPRFTG DETSMDHSGT 420 QATVPAVAAT AAGMSMPCDD VPVTSSSSDL PPQGTPQTPT FMWKED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-20 | 213 | 273 | 4 | 65 | ATERF1 |
3gcc_A | 5e-20 | 213 | 273 | 4 | 65 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL662976 | 0.0 | AL662976.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855230 | 0.0 | CR855230.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0115K01-H0319F09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634091.1 | 0.0 | ethylene-responsive transcription factor ERF054 | ||||
TrEMBL | A0A0E0H3E7 | 0.0 | A0A0E0H3E7_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA04G17660.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3691 | 32 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20880.1 | 1e-35 | ERF family protein |