PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G16290.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 797aa    MW: 81536.7 Da    PI: 7.2486
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G16290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.8e-16519570155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+++++ grW A+I  +     +k ++lg+f t+eeAa+a++ a+ k++g
  ONIVA04G16290.1 519 SKYRGVTRHHQHGRWQARIGRVAG---NKDIYLGTFSTEEEAAEAYDIAAIKFRG 570
                      89****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.14E-18519580IPR016177DNA-binding domain
PfamPF008472.1E-10519570IPR001471AP2/ERF domain
CDDcd000181.32E-23519580No hitNo description
Gene3DG3DSA:3.30.730.102.6E-18520579IPR001471AP2/ERF domain
SMARTSM003804.3E-34520584IPR001471AP2/ERF domain
PROSITE profilePS5103219.401520578IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 797 aa     Download sequence    Send to blast
MASADNWLGF SLSGQGNPQH HQNGSPSAAG DAAIDISGSG DFYGLPTPDA HHIGMAGEDA  60
PYGVMDAFNR GTHETQDWAM RGLDYGGGSS DLSMLVGSSG GGRRTVAGDG GGEAPKLENF  120
LDGNSFSDVH GQAAGGYLYS GSAVGGAGGY SNGGCGGGTI ELSMIKTWLR SNQSQQQPSP  180
PQHADQGMST DASASSYACS DVLVGSCGGG GGAGGTASSH GQGLALSMST GSVAAAAGGG  240
AVVAAESSSS ENKRVDSPGG AVDVAVPRKS IDTFGQRTSI YRGVTSRKQR ILGESCMVIS  300
LVCFADWALR GLDYGGGSSD LSMLVGSSGG GRRTVGDGGG EAPKLENFLD GILFSDVHGQ  360
AAGGYLYSGS TVNGAGGYSN GGCGGGLAWA GPGAVDEHGV GGRRRRGRRR RRGRELVVGE  420
QAGGFAGRRR GRRRPEEIHR HLRAKDVYIP RCNKPRGIDG QEDMKLICGI IAVGEKAKVA  480
RGDRMSNYEK ELEEMKHMTR QEYIAHLRRN SSGFSRGASK YRGVTRHHQH GRWQARIGRV  540
AGNKDIYLGT FSTEEEAAEA YDIAAIKFRG LNAVTNFDMS RYDVKSILDS STLPVGGAAR  600
RLKEAEAAAA AAGGGVIVSH LADGGVGGYY YGCGPTIAFG GGGQQPAPLA VHYPSYGQAS  660
GWCKPEQDAV IAAGHCATDL QHLHLGSGGA AATHNFFQQP ASSSAVYGNG GGGGGNAFMM  720
PMGAVVAAAD HGGQSSAYGG GDESGRLVVG YDGVVDPYAA MRSAYELSQG SSSSSVSVAK  780
AANGYPDNWS SPFNGMG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1403413RRRGRRRRRGR
2404411RRGRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2412720.0AK241272.1 Oryza sativa Japonica Group cDNA, clone: J065132I19, full insert sequence.
GenBankAK2877260.0AK287726.1 Oryza sativa Japonica Group cDNA, clone: J065138E17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635553.10.0AP2-like ethylene-responsive transcription factor BBM1
TrEMBLA0A0E0H2W10.0A0A0E0H2W1_ORYNI; Uncharacterized protein
STRINGONIVA04G16290.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.11e-54AP2 family protein