PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G14230.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 966aa    MW: 106585 Da    PI: 6.6251
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G14230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.56.9e-29872282128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........t 78 
                      p G++F+P+d e++ e+L++k++  +      ++ +   +++v +i++++P++Lp  +k + ++ +fF++ +++y +g+rk+r+          
  ONIVA04G14230.1  87 PDGVKFDPSDLEVL-EHLERKINLGNpgpqglIDHFIPtLEKVeGICYTHPENLP-GIKLDGTSSHFFHRISNAYGSGQRKRRKishtghaasD 178
                      88**********99.99****998887887774444444888878**********.66778899*******************76776666554 PP

              NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                      ++ +W++tgk+k++++ +g l+g kk+Lv+ykg +++k ++++Wvmh+y+l
  ONIVA04G14230.1 179 ENIRWHKTGKSKQIYH-NGVLKGWKKILVLYKGsKKNKIVQANWVMHQYNL 228
                      4678************.99************996777889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-3470247IPR003441NAC domain
PROSITE profilePS5100528.47386247IPR003441NAC domain
PfamPF023651.8E-1187228IPR003441NAC domain
PROSITE profilePS513758.912551581IPR002885Pentatricopeptide repeat
PfamPF015359.8E-4554579IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.3E-4554578IPR002885Pentatricopeptide repeat
PfamPF130411.6E-16581631IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.134582616IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.9E-9584618IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.452618652IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.5E-9620650IPR002885Pentatricopeptide repeat
SuperFamilySSF819012.14E-9631756No hitNo description
PfamPF130414.0E-10653700IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.972654688IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.1E-6656689IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.105.3E-9665890IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513759.81689723IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.9E-4692724IPR002885Pentatricopeptide repeat
PROSITE profilePS5137514.041724758IPR002885Pentatricopeptide repeat
PfamPF130411.0E-16724772IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.7E-11726758IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.981759793IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.6E-7761794IPR002885Pentatricopeptide repeat
SuperFamilySSF819012.14E-9793899No hitNo description
PfamPF130411.6E-15793841IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.641794828IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.7E-6796829IPR002885Pentatricopeptide repeat
PROSITE profilePS5137514.458829863IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.1E-11831864IPR002885Pentatricopeptide repeat
PfamPF130412.1E-16863912IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.384864898IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.7E-9866899IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.461899933IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.3E-10902934IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 966 aa     Download sequence    Send to blast
MARLVTVAAA KVKGSASRFR YVCSTPRTLD QPWIIAGGKV IATKIRNATQ LLSCKLGELV  60
PEAWRECPNC KCHIDNSDVT LQWPEFPDGV KFDPSDLEVL EHLERKINLG NPGPQGLIDH  120
FIPTLEKVEG ICYTHPENLP GIKLDGTSSH FFHRISNAYG SGQRKRRKIS HTGHAASDEN  180
IRWHKTGKSK QIYHNGVLKG WKKILVLYKG SKKNKIVQAN WVMHQYNLGV EEGGEDGELV  240
VSKVFYQLSS KQTGTPEMDS VTEEASDALT IRSDPITPIT NPPLPRCLMN SPCDTEQNGT  300
ISHDQEGECS TSTLRPMVEA GNRAGCSAGA STAGDFNEDL LQRCEFPEDP VPTLDDTLPF  360
LYTDETDLFS WEDFQFGSQE SFGWVDGDHT LVQFLYLCMW DRLLVDDLLR EKSIPLPNSV  420
ENSRKTLLRS PQFHMAPPTS AAAAVAAAAR ASPTSAAALA LFKSALSADK ALSPLAVLPH  480
LDGAPSSLPN LLLTASAAVR PHATSLRLYS RMKSLSLPIS TASLHPLLSA LPSAPAFALF  540
ADMFRLRLPL CTTTFNIMLR HLCSAGKPAR ALELLRQMPR PNAVTYNTVI AGFCSRGRVQ  600
AALDIMREMR ERGGIAPNQY TYGTVISGWC KVGRVDEAVK VFDEMLTKGE VKPEAVMYNA  660
LIGGYCDQGK LDTALLYRDR MVERGVAMTV ATYNLLVHAL FMDGRGTEAY ELVEEMGGKG  720
LALDVFTYNI LINGHCKEGN VKKALEIFEN MSRRGVRATV VTYTSLIYAL SKKGQVQETD  780
KLFDEAVRRG IRPDLVLYNA LINSHSTSGN IDRAFEIMGE MEKKRIAPDD VTYNTLMRGL  840
CLLGRVDEAR KLIDEMTKRG IQPDLVTYNT LISGYSMKGD VKDALRIRNE MMNKGFNPTL  900
LTYNALIQGL CKNGQGDDAE NMVKEMVENG ITPDDSTYIS LIEGLTTEDE RAIDDERLAA  960
ADAAKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9f_A1e-1195219452444pentatricopeptide repeat protein dPPR-U10
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8551560.0CR855156.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0116M22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634992.20.0pentatricopeptide repeat-containing protein At2g15630, mitochondrial
TrEMBLA0A0E0H2510.0A0A0E0H251_ORYNI; Uncharacterized protein
STRINGONIVA04G14230.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64100.21e-60pentatricopeptide (PPR) repeat-containing protein