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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G11950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 193aa MW: 20721.4 Da PI: 5.7692 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58 | 2.3e-18 | 21 | 71 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++k +g+Wv+eIr p g ++r++lg+f +ae+Aa a++ a+++l+g ONIVA04G11950.1 21 CQYRGVRRRK-WGKWVSEIRQP---GTKTRIWLGSFESAEMAAVAHDVAALRLRG 71 68*****998.**********8...325*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 21 | No hit | No description |
Pfam | PF00847 | 5.6E-12 | 21 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.59E-30 | 21 | 79 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.6E-31 | 22 | 79 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.04E-22 | 22 | 80 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.709 | 22 | 79 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.1E-37 | 22 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-10 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-10 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MVVAMGRSSS AMAAAAAGGG CQYRGVRRRK WGKWVSEIRQ PGTKTRIWLG SFESAEMAAV 60 AHDVAALRLR GRDAQLNFPG SVDRLPRPAS SRPGDIRAAA AEAADRVRRE PALVVVRGAA 120 AAGGELAAAR WAGVEVEVEQ QLGGSDEEFE VDSPRLWAEM AEAMLLDPPV WAVDVSEMEG 180 PHCWAHGSLW DAY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-17 | 20 | 83 | 3 | 67 | ATERF1 |
3gcc_A | 3e-17 | 20 | 83 | 3 | 67 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL731606 | 0.0 | AL731606.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058G03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194473.1 | 5e-77 | ethylene-responsive transcription factor ERF021-like | ||||
TrEMBL | A0A0E0H1A9 | 1e-132 | A0A0E0H1A9_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA04G11950.1 | 1e-133 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2244 | 33 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 8e-25 | ERF family protein |