PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G10650.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 888aa MW: 100076 Da PI: 7.5174 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.6 | 3.1e-50 | 518 | 646 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtd el v+yLk+k+ gk+l++ ++++e+d+yk+ PwdLp k +++++++ewyfF++rd+ky++g+r+nr+t++gyWkatgkd++v ONIVA04G10650.2 518 LPPGFRFHPTDVELTVYYLKRKLLGKHLRC-NAVSELDLYKFAPWDLPeKsSLQSKDREWYFFCPRDRKYSSGSRTNRSTEAGYWKATGKDRPV 610 79****************************.89**************95357788999************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + ++++vg+k+tLvf+ g+ p+g +tdWvm eyrle ONIVA04G10650.2 611 IY-NSQTVGMKRTLVFHLGKPPRGDRTDWVMYEYRLE 646 **.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03016 | 4.5E-42 | 53 | 340 | IPR004263 | Exostosin-like |
SuperFamily | SSF101941 | 9.15E-61 | 509 | 668 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.488 | 518 | 668 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-26 | 519 | 645 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005768 | Cellular Component | endosome | ||||
GO:0005802 | Cellular Component | trans-Golgi network | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 888 aa Download sequence Send to blast |
MRSSHQPLCT RAHQAAALLL VAATFFLTRL LDRSPLSAPP PPCAAPYSPW PHRDLRIYVY 60 AEDEVDGLRA LLRGRNDDVT AATCIKGQWG TQVKIHQLLL SSRFRTFDKD EADLFFVPTY 120 VKCVRMTGKL NDKEINQTYV KVVLSQMPYF RRSGGRDHIF VFPSGAGAHL FRSWATFLNR 180 SIILTPEGDR TDKRGISAFN TWKDIIIPGN VDDSMVKSDR LAVKPIPLTK RKYLANFLGR 240 AQGKVGRLQL VKLAKQYPDK LESPELKLSG PDKLGRIDYF KHLRNAKFCL APRGESSWTL 300 RFYESFFVEC VPVILSDEVE LPFQNVIDYT EVSIKWPASK IGPGLLEYLE SIPDGRVEEM 360 IGRGREIRCL WVYAADTERC SAMSAIMWEL QRKVRRFHQS AETFWLHNRS IVNRDLVEFH 420 EWRTPGDGDG SRLPLSAARR LFPIPPRRFS SPTHQRPASH SPLLSSQSLI PPLSYRIRIS 480 TTIHHLLSAA APHFLPSPTA TTSYRQRSIL LSMAKTSLPP GFRFHPTDVE LTVYYLKRKL 540 LGKHLRCNAV SELDLYKFAP WDLPEKSSLQ SKDREWYFFC PRDRKYSSGS RTNRSTEAGY 600 WKATGKDRPV IYNSQTVGMK RTLVFHLGKP PRGDRTDWVM YEYRLEDKEL SASGVKLDAC 660 VLCKIFQKSG PGPKIGEQYG APFNEDDWNE ANGELSSFAF SVPPCALESS NGRLNTAGQQ 720 LAVSDNIGSS LDHCSETNDK IAVGGCGTTS PSVPFDTIHT QQLAEIISCF STDLLNSVSR 780 DGSLPDSTAD YDNDNEVSSD DGEAIFNELD ELDSQSDESI SNHCNSCGED LIPPTLEVLK 840 TEQYLELNDL SFSLADDPDP CNLLLTTNLS DQNHPELETS SNRKALRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-49 | 514 | 668 | 11 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064646 | 0.0 | AK064646.1 Oryza sativa Japonica Group cDNA clone:002-114-D03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0H0S5 | 0.0 | A0A0E0H0S5_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA04G10650.2 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9932 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09330.4 | 2e-77 | NAC domain containing protein 82 |