PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G10330.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 284aa    MW: 30966 Da    PI: 11.0742
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G10330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.2e-083761227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     k +lC+ +++ G C+ G  C++aHg+
  ONIVA04G10330.1 37 KSVLCMKWRE-GRCHNGVACRYAHGE 61
                     678*******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.0E-63366IPR000571Zinc finger, CCCH-type
SMARTSM003560.00113561IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-93566IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2063562IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-63761IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDSAAAERPS SYAVNFPPLL PAPAPAVAGA MGVANHKSVL CMKWREGRCH NGVACRYAHG  60
EEDQRIVPEM RVGGGGTSMH ARSSPPRDGA SSGSTASIAM AACRIEEQRH GRGGESFILP  120
RSRRKRQYTE AWAARGGAAR GWWGEELWRA AGEGQRAGSG KRSDARAAPP ATAHEEVPGR  180
RRASAFIMSG FKSSQAEVTE STPRRLLTPP SNRHADWRRL LDAAVARVLD LFRLGYLFSP  240
RWIHLWHRLP LYLHDRQFTT PSIPAGNVAQ AITNVLELHV GNGV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0059120.0AP005912.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0064I23.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0H0N00.0A0A0E0H0N0_ORYNI; Uncharacterized protein
STRINGONIVA04G10330.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3154444