PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G08280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 70aa MW: 7905.23 Da PI: 10.1329 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.6 | 2.4e-16 | 11 | 61 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE..-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif..sstgklyeys 50 rie+ +r + f kR++g+ KKAeEL vLCda v +++ s +++l+ ++ ONIVA04G08280.1 11 RIEDRVRRGICFRKRLAGLEKKAEELAVLCDAHVGFVVLscSDDDRLHHFA 61 8*********************************87776226788888886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 18.082 | 2 | 50 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.7E-13 | 2 | 63 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-16 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-11 | 4 | 24 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.4E-19 | 11 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-11 | 24 | 39 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-11 | 39 | 60 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 70 aa Download sequence Send to blast |
MGRRGRVVLR RIEDRVRRGI CFRKRLAGLE KKAEELAVLC DAHVGFVVLS CSDDDRLHHF 60 AAPATYALSP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR855097 | 1e-115 | CR855097.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0075F02, complete sequence. | |||
GenBank | CR855115 | 1e-115 | CR855115.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0148P16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637115.1 | 6e-26 | truncated transcription factor CAULIFLOWER D-like isoform X1 | ||||
Refseq | XP_025880634.1 | 2e-26 | MADS-box transcription factor 33-like isoform X3 | ||||
Refseq | XP_025880635.1 | 3e-26 | MADS-box transcription factor 33-like isoform X4 | ||||
TrEMBL | A0A0D3FV42 | 3e-42 | A0A0D3FV42_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9ZJY9 | 3e-42 | A0A0D9ZJY9_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GZW1 | 3e-42 | A0A0E0GZW1_ORYNI; Uncharacterized protein | ||||
TrEMBL | I1P622 | 3e-42 | I1P622_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM04G10090.1 | 5e-43 | (Oryza glumipatula) | ||||
STRING | ONIVA04G08280.1 | 5e-43 | (Oryza nivara) | ||||
STRING | ORGLA02G0342800.1 | 5e-43 | (Oryza glaberrima) | ||||
STRING | OBART04G10400.1 | 5e-43 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15493 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 4e-14 | AGAMOUS-like 21 |