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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G03680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 130aa MW: 14367.8 Da PI: 5.957 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.7 | 2.3e-21 | 10 | 61 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GVr+++ +g+++AeIrdp + r++lg+f+taeeAa+a+++a+ +++g ONIVA04G03680.1 10 SKYRGVRRRP-WGKFAAEIRDPERG--GSRVWLGTFDTAEEAARAYDRAAFAMKG 61 89********.**********8333..4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.19E-31 | 10 | 69 | No hit | No description |
Pfam | PF00847 | 1.2E-15 | 10 | 61 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.73E-24 | 10 | 69 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.513 | 11 | 69 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-36 | 11 | 75 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-32 | 11 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-12 | 12 | 23 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-12 | 35 | 51 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MEDDKKEAAS KYRGVRRRPW GKFAAEIRDP ERGGSRVWLG TFDTAEEAAR AYDRAAFAMK 60 GAMAVLNFPG RTSSTGSSSS SSSSSTPPAP VTTSRHCADT TEKVELVYLD DKVLDELLAE 120 DYSYRNNNNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-29 | 12 | 74 | 6 | 68 | ATERF1 |
3gcc_A | 8e-29 | 12 | 74 | 6 | 68 | ATERF1 |
5wx9_A | 9e-29 | 10 | 113 | 13 | 114 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635372.1 | 5e-79 | ethylene-responsive transcription factor ERF098 | ||||
Swissprot | Q9LTC5 | 4e-34 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A0E0GY74 | 3e-90 | A0A0E0GY74_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2XR35 | 3e-90 | A2XR35_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA04G03680.1 | 5e-91 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 6e-23 | ERF family protein |
Publications ? help Back to Top | |||
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