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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
ONIVA04G02900.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
TCP |
| Protein Properties |
Length: 183aa MW: 18788 Da PI: 6.9728 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ONIVA04G02900.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 107.2 | 2.6e-33 | 51 | 130 | 3 | 78 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaess 78
k ++s++h+kv gR+RRvR++a +aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt+ +++++ +ss
ONIVA04G02900.1 51 RKSPSSSDRHSKVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVTPEEAPpaavAIGSS 130
577899*********************************************************66666333222211222 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 183 aa
Download sequence Send
to blast |
MASSSDLILY NLVPAQPLNP SAIPNPNPDL SIAAAEPPSS DGATPRRVRP RKSPSSSDRH 60
SKVAGRGRRV RIPAMVAARV FQLTRELGHR TDGETIEWLL RQAEPSIIAA TGTGVTPEEA 120
PPAAVAIGSS SVAAAAAAAG HGGAFVHVPY YTALLMQPPN ADEPPMASAA SASGTTAADE 180
NNN
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AL607008 | 0.0 | AL607008.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0026E15, complete sequence. |
| GenBank | AL662965 | 0.0 | AL662965.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0040D17, complete sequence. |
| GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
