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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G02150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CPP | ||||||||
Protein Properties | Length: 211aa MW: 23790.8 Da PI: 8.6756 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 40.2 | 6.9e-13 | 61 | 99 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++++C+C ks+C+k+YC Cf+a +Cs++C+C++CkN+e ONIVA04G02150.1 61 QHRSCRCVKSNCVKLYCLCFSAYGYCSQNCRCTNCKNRE 99 6789*********************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 5.1E-9 | 60 | 101 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 17.145 | 61 | 161 | IPR005172 | CRC domain |
Pfam | PF03638 | 5.4E-10 | 63 | 99 | IPR005172 | CRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MGQASISSSS SSPAPSTVAA FSPLRPPSAA SHTNQGMRAS LPLALLLLLR LISARSMSND 60 QHRSCRCVKS NCVKLYCLCF SAYGYCSQNC RCTNCKNREY YEDFVEERVD MIKMKNPRAF 120 DPKIVRVQDA SEIEPQSSNA VLHEVRCTSK CQCIDCGNGP RTKCEYTRLL FLFPCLMTSK 180 CVINCFGIAW KHRILILFFT HVIFFVLNIF I |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL731589 | 1e-114 | AL731589.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19, complete sequence. | |||
GenBank | AP014960 | 1e-114 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 1e-114 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0GXQ4 | 1e-154 | A0A0E0GXQ4_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA04G02150.1 | 1e-155 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12267 | 23 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04850.1 | 2e-15 | Tesmin/TSO1-like CXC domain-containing protein |