PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G00200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 865aa MW: 93965.7 Da PI: 5.174 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.3 | 1.1e-07 | 52 | 83 | 1 | 27 |
--S---SGGGGTS.....--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG.....tCkyGdrCkFaHgp 27 +kt+lC+ff+r C++Gd+C++aH++ ONIVA04G00200.1 52 WKTSLCSFFRRRAassadGCSHGDSCRYAHSE 83 8**********88*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-12 | 48 | 89 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.83E-6 | 49 | 88 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.338 | 51 | 84 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-5 | 52 | 83 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54928 | 9.98E-5 | 130 | 214 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene3D | G3DSA:3.30.70.330 | 1.4E-5 | 130 | 216 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PROSITE profile | PS51687 | 43.806 | 260 | 865 | IPR010280 | (Uracil-5)-methyltransferase family |
SuperFamily | SSF53335 | 4.08E-49 | 262 | 288 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 4.08E-49 | 320 | 423 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 4.08E-49 | 482 | 609 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene3D | G3DSA:3.40.50.150 | 1.3E-62 | 505 | 609 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Pfam | PF13847 | 2.1E-9 | 549 | 611 | IPR025714 | Methyltransferase domain |
CDD | cd02440 | 2.17E-7 | 555 | 609 | No hit | No description |
Gene3D | G3DSA:3.40.50.150 | 1.3E-62 | 748 | 805 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 4.08E-49 | 753 | 865 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Pfam | PF05958 | 1.0E-6 | 758 | 801 | IPR010280 | (Uracil-5)-methyltransferase family |
PROSITE pattern | PS01230 | 0 | 761 | 793 | IPR030390 | RNA methyltransferase TrmA, active site |
Gene3D | G3DSA:3.40.50.150 | 1.3E-62 | 840 | 865 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001510 | Biological Process | RNA methylation | ||||
GO:0006396 | Biological Process | RNA processing | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0008173 | Molecular Function | RNA methyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 865 aa Download sequence Send to blast |
MEMEMEDNKA PSPPSPMESD VAGEKRKRED DASSSAVLAA ANNTGGAQHP MWKTSLCSFF 60 RRRAASSADG CSHGDSCRYA HSEEELRPRP DGTWDPTSDR AKKLRKVAAD EVEEEVVTID 120 DKALDKCLVG LPRGWANDRL KTFLQDKART NYSSILPPAL LLGISYATAK KKKGMTVGFV 180 TFENIEQLKN AIEVLTENQS GGKEIKIADA NRRSHQKLHT EKPVSDNGVT TENGTSVDVP 240 PGETSAPEAA ISNKKSVRDA VTPLAHMSYN DQLEHKKNSV AQILKRLTRN ARKACPTGIP 300 LPDWVFKSKE IGGLPCKLEG ILESPVINGY RNKCEFSVGF SLEGKKTVGF MLGNFREGVT 360 AVEEPVDCPN VSEISCKYAL MFQDFLQSSS LPVWNRVDNC GFWRQFTVRE GRCRAQAVAQ 420 NAETQISEVM LIVQVCSTGV DDAVMKDEFD KLTVALQQGA ATCSPPLPLT TIVVQDHKGI 480 SNAAPADCPL IPLLVPKVDQ SEGTVDKTRI HDHIGNLWFS ISPTAFFQVN TLAAERLYTL 540 AGDWANLNSG TLLFDVCCGT GTIGLTLAHR VGMVVGIEMN ESAVSDAERN ALINGVSNCR 600 FVCGKAEDVM GSLLTEYLGS PQQDIPVSEG AVSGTVKDEE VIDSSKNSGE NLDSSMQKND 660 NGKSQQLGDA PADSSSSAID EIKGNSNDRV GNGLEGSHDE YNEVAGEDIH GEASLINESV 720 DLKVSDCLED RKTSDDGSSI SNNDVTAATA CQFEDIVAIV DPPRVGLHPT VIKALRTHPR 780 IRRLVYISCN PDSLVANAIE LCTPSSEKQE KNKGNRGWRT MSSAGLARQR TKSMPNSEPF 840 VPKRAMAVDL FPHTSHCEMV MLFER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5xj1_A | 3e-16 | 519 | 616 | 274 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_A | 3e-16 | 519 | 616 | 274 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_B | 3e-16 | 519 | 616 | 274 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_C | 3e-16 | 519 | 616 | 274 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_D | 3e-16 | 519 | 616 | 274 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5zq0_A | 4e-16 | 519 | 616 | 275 | 372 | Uncharacterized RNA methyltransferase SP_1029 |
5zq1_A | 3e-16 | 519 | 616 | 274 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5zq8_A | 3e-16 | 519 | 616 | 274 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5zq8_B | 3e-16 | 519 | 616 | 274 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5zth_A | 4e-16 | 519 | 616 | 275 | 372 | Uncharacterized RNA methyltransferase SP_1029 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120156 | 0.0 | AK120156.1 Oryza sativa Japonica Group cDNA clone:J013030B09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636996.1 | 0.0 | zinc finger CCCH domain-containing protein 24 isoform X1 | ||||
Swissprot | Q8L7S3 | 0.0 | C3H24_ARATH; Zinc finger CCCH domain-containing protein 24 | ||||
TrEMBL | A0A0E0GX09 | 0.0 | A0A0E0GX09_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA04G00200.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8493 | 31 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28450.2 | 0.0 | C3H family protein |
Publications ? help Back to Top | |||
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