PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G41670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 354aa MW: 40498.9 Da PI: 8.6755 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.4 | 3.5e-15 | 38 | 114 | 14 | 94 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 + +++p k ae ++g+ ++ l+++sg++W+v + k ++ +l++GW++F+ka++L+e+D + F+ +g+ ++++ + ONIVA03G41670.1 38 HGISIPEKVAEIFSGQITK--GFNLKSPSGETWRVGV--AKVADELILKSGWEDFAKAHELQENDLLFFTCNGHGNGSCSF 114 459*******777777555..59999***********..*******************************77665554443 PP | |||||||
2 | B3 | 48.4 | 1.7e-15 | 247 | 344 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 f+ vl +++v ++++l++p +fa++h + +s ++ l + ++W+vk+ y +++ +++ W +F ++n+L+eg +++F+l++ ++ + ONIVA03G41670.1 247 FVVVLQTAHVRRRNILIVPTRFAADHLER--KSHDILLIRpNRKQKWSVKYYYlSNTTRGFNCH-RWIKFIRENRLREGNVCIFELMKGaRRPT 337 788999********************544..45567776636779******8865555555544.8*******************997768888 PP .EEEEE- CS B3 92 lvvkvfr 98 ++v+v+ ONIVA03G41670.1 338 MTVHVIG 344 9999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.32E-18 | 21 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.069 | 25 | 122 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.77E-14 | 27 | 120 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 7.8E-18 | 28 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.4E-6 | 28 | 122 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-12 | 37 | 112 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.3E-18 | 240 | 344 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.06E-21 | 241 | 342 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.01E-18 | 245 | 341 | No hit | No description |
PROSITE profile | PS50863 | 13.225 | 247 | 346 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-13 | 247 | 344 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.9E-10 | 247 | 346 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MGEKGCESCR KWQEHYYREH MDVSRIRFFR LMTGDFAHGI SIPEKVAEIF SGQITKGFNL 60 KSPSGETWRV GVAKVADELI LKSGWEDFAK AHELQENDLL FFTCNGHGNG SCSFDVLIFD 120 ASGCEKVSCF FTGKKNSYMC KNFNSIGGQV AGQYLSSDSE DTSTPSVLIG SPHKASTSKK 180 LSGKTKTNPR KEPEDPNCSH WHVIEEKNTD DDEHADYHYT RFANYLTGEE RDEIFSLVSL 240 QPGNPVFVVV LQTAHVRRRN ILIVPTRFAA DHLERKSHDI LLIRPNRKQK WSVKYYYLSN 300 TTRGFNCHRW IKFIRENRLR EGNVCIFELM KGARRPTMTV HVIGKADNRF VLLG |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL954829 | 0.0 | AL954829.6 Oryza sativa chromosome 12, . BAC OSJNBa0044E20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619308.1 | 0.0 | LOW QUALITY PROTEIN: B3 domain-containing protein LOC_Os12g40090-like | ||||
Swissprot | Q2QMT5 | 0.0 | Y1209_ORYSJ; B3 domain-containing protein LOC_Os12g40090 | ||||
TrEMBL | A0A0D3HWA3 | 0.0 | A0A0D3HWA3_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GVZ8 | 0.0 | A0A0E0GVZ8_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0RJF4 | 0.0 | A0A0E0RJF4_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2ZM93 | 0.0 | A2ZM93_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1R7J7 | 0.0 | I1R7J7_ORYGL; Uncharacterized protein | ||||
STRING | ORUFI12G19410.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA03G41670.1 | 0.0 | (Oryza nivara) | ||||
STRING | ORGLA12G0150300.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART12G17530.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-29 | B3 family protein |