PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G37210.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 347aa    MW: 37641.6 Da    PI: 8.168
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G37210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.63.7e-072602892655
                      -HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  26 saeereeLAkklgLterqVkvWFqNrRake 55 
                      ++ e+  LA+ +gL+++q+++WF N+R ++
  ONIVA03G37210.1 260 QEMEKMTLAQTTGLDQKQISNWFINQRKRH 289
                      5668889********************885 PP
2ELK41.23.4e-14170191122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      +LKhqLlrKY+g+Lg+L+qEFs
  ONIVA03G37210.1 170 QLKHQLLRKYGGSLGDLRQEFS 191
                      59*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.5E-2079123IPR005540KNOX1
PfamPF037901.4E-1980119IPR005540KNOX1
PROSITE profilePS5121310.894170190IPR005539ELK domain
PfamPF037898.0E-11170191IPR005539ELK domain
SMARTSM011882.1E-7170191IPR005539ELK domain
Gene3DG3DSA:1.10.10.601.3E-21195222IPR009057Homeodomain-like
SMARTSM003890.002233296IPR001356Homeobox domain
PROSITE profilePS5007110.122258292IPR001356Homeobox domain
SuperFamilySSF466891.71E-9258298IPR009057Homeodomain-like
PfamPF059205.2E-10261288IPR008422Homeobox KN domain
Gene3DG3DSA:1.10.10.601.3E-21261292IPR009057Homeodomain-like
CDDcd000861.09E-7263292No hitNo description
PROSITE patternPS000270267290IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MESFASLAGG GSSSTTARLP ELIPPENPDR ISPPPLLYQL LAGSASSARH GHGHHHGGGG  60
GAAAAAVQGL QVSPAGAEAA MKAEIMSHPQ YSALLAAYLG CKKVGAPPDV LTKLTAVPAA  120
QQQLDAADGH PRRRHEPRQS NCEGTGSSEE EQDQDTSCPE AEEIDPSDKQ LKHQLLRKYG  180
GSLGDLRQEF SKRTKKGKLP KEARLKLLHW WELHYDKWPY PSVRTHIYAS HLINSTTFFC  240
TKLDLMKMRE LLGCTCVYEQ EMEKMTLAQT TGLDQKQISN WFINQRKRHW KPTPVAGMTF  300
PTVEAAGGGF RHSGHDGGLA AAAAAAALPL YMGSWPFVVD GMYRLGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879690.11e-176homeobox protein knotted-1-like 9
SwissprotQ10EC61e-177KNOS9_ORYSJ; Homeobox protein knotted-1-like 9
TrEMBLA0A0E0GUC90.0A0A0E0GUC9_ORYNI; Uncharacterized protein
STRINGONIVA03G37210.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147561321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.14e-38KNOTTED-like from Arabidopsis thaliana