PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G37180.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 353aa    MW: 38613.1 Da    PI: 6.1146
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G37180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.7e-092652992155
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      k +yps+ e+  LA+ +gL+++q+ +WF N+R ++
  ONIVA03G37180.1 265 KWPYPSEMEKMTLAQTTGLDQKQINNWFINQRKRH 299
                      669*****************************885 PP
2ELK41.23.4e-14219240122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      +LKhqLlrKY+g+Lg+L+qEFs
  ONIVA03G37180.1 219 QLKHQLLRKYGGSLGDLRQEFS 240
                      59*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.0E-1881125IPR005540KNOX1
PfamPF037901.6E-1882121IPR005540KNOX1
SMARTSM012567.2E-26136188IPR005541KNOX2
PfamPF037911.1E-19146186IPR005541KNOX2
SMARTSM011882.1E-7219240IPR005539ELK domain
PROSITE profilePS5121310.894219239IPR005539ELK domain
PfamPF037898.2E-11219240IPR005539ELK domain
PROSITE profilePS5007112.503239302IPR001356Homeobox domain
SMARTSM003891.2E-11241306IPR001356Homeobox domain
SuperFamilySSF466892.27E-18241306IPR009057Homeodomain-like
CDDcd000861.79E-13242302No hitNo description
Gene3DG3DSA:1.10.10.609.9E-27244302IPR009057Homeodomain-like
PfamPF059207.1E-17259298IPR008422Homeobox KN domain
PROSITE patternPS000270277300IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MESFASLAGG GSSSTTARLP ELISPENPDH ISPPPLLYQL LAGPESSARQ HGHDGHHHGG  60
GGGEAAAAAV QGQVSPAGAE AAVKAEIMSH PQYSALLAAY LGCKKVGAPP DLLTKLTAVP  120
AAQQLDEADG HPRRRHEPQR DDDPDQLDQF MDAYCSMLTR YREELERPIQ EAAEFFSRVE  180
TQLDSLAESN CEGTGSSEEE QDQDTSCPEA EEIDPSDKQL KHQLLRKYGG SLGDLRQEFS  240
KRTKKGKLPK EARQKLLHWW ELHYKWPYPS EMEKMTLAQT TGLDQKQINN WFINQRKRHW  300
KPTPVAGTAF PTMEAAGGGF RHSGHGGGLA AAAALPLYMG RPFVVDGMYR LGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00671PBMTransfer from GRMZM2G135447Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0288840.0AB028884.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH43, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879466.10.0homeobox protein knotted-1-like 8 isoform X1
SwissprotQ10ED20.0KNOS8_ORYSJ; Homeobox protein knotted-1-like 8
TrEMBLA0A0E0GUC40.0A0A0E0GUC4_ORYNI; Uncharacterized protein
STRINGONIVA03G37180.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147561321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.18e-73KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]