PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G33890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 578aa MW: 62477.5 Da PI: 5.9538 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 353.1 | 4.5e-108 | 209 | 578 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 + Ll+c +a ++ d la a La ++ a+ +gdp +Rla+yf+ AL++rla ++ + +++++++ s+e + +k++++++P+ kf+hl ONIVA03G33890.1 209 QSLLSCSRAAAT-DPGLAAAELASVRAAATDAGDPSERLAFYFADALSRRLAC---GTGAPPSAEPDARFASDELTLCYKTLNDACPYSKFAHL 298 7899**998776.89999999*******************************8...5555555566666669999******************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 taNqaIlea+ ++++Hi+Df+i qG+QW+aLlqaLa+Rpeg+p ++RiTgv sp g + +l +t+ rL++fA+ lgv+fef + + + ++ ONIVA03G33890.1 299 TANQAILEATGAATKIHIVDFGIVQGIQWAALLQALATRPEGKPtRIRITGVPSPLLGpqPAASLAATNTRLRDFAKLLGVDFEFVP-LLRPVH 391 ****************************************88777*********998888999************************.599*** PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 +l+ +++ v+p+Ea+aVn++lql++ll +s +l +vL+l kslsP vv++ e e+++n++ F++rf++al+yy +lf+sl++ + r+s e ONIVA03G33890.1 392 ELNKSDFLVEPDEAVAVNFMLQLYHLLGDSDELVR---RVLRLAKSLSPAVVTLGEYEVSLNRAGFVDRFANALSYYRSLFESLDVAMTRDSPE 482 ***************************88888877...******************************************************** PP GRAS 282 rikvErellgreivnvva.cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSa 372 r+ vEr ++g++i+ +v ega+r+er+ ++W+ +e +GF+pvpls++a +qa+lll +++ + y++ e +++ l W++rpL++vSa ONIVA03G33890.1 483 RVRVERWMFGERIQRAVGpEEGADRTERMAGSSEWQTLMEWCGFEPVPLSNYARSQADLLLWNYDsKYKYSLVELPPAFLsLAWEKRPLLTVSA 576 *****************8356889*****************************************7778999999999988************* PP GRAS 373 Wr 374 Wr ONIVA03G33890.1 577 WR 578 *8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 57.782 | 181 | 556 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-105 | 209 | 578 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 578 aa Download sequence Send to blast |
MAYMCADSGN LMAIAQQVIQ QQQQQQQQQQ RHHHHHHLPP PPPPQSMAPH HHQQKHHHHH 60 QQMPAMPQAP PSSHGQIPGQ LAYGGGAAWP AGEHFFADAF GASAGDAVFS DLAAAADFDS 120 DGWMESLIGD APFQDSDLER LIFTTPPPPV PSPPPTHAAA TATATAATAA PRPEAAPALL 180 PQPAAATPVA CSSPSPSSAD ASCSAPILQS LLSCSRAAAT DPGLAAAELA SVRAAATDAG 240 DPSERLAFYF ADALSRRLAC GTGAPPSAEP DARFASDELT LCYKTLNDAC PYSKFAHLTA 300 NQAILEATGA ATKIHIVDFG IVQGIQWAAL LQALATRPEG KPTRIRITGV PSPLLGPQPA 360 ASLAATNTRL RDFAKLLGVD FEFVPLLRPV HELNKSDFLV EPDEAVAVNF MLQLYHLLGD 420 SDELVRRVLR LAKSLSPAVV TLGEYEVSLN RAGFVDRFAN ALSYYRSLFE SLDVAMTRDS 480 PERVRVERWM FGERIQRAVG PEEGADRTER MAGSSEWQTL MEWCGFEPVP LSNYARSQAD 540 LLLWNYDSKY KYSLVELPPA FLSLAWEKRP LLTVSAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 0.0 | 204 | 578 | 1 | 375 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (PubMed:27081181). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:27081181}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC146936 | 0.0 | AC146936.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone B1154F06 map near C10769, complete sequence. | |||
GenBank | AK064022 | 0.0 | AK064022.1 Oryza sativa Japonica Group cDNA clone:001-125-A04, full insert sequence. | |||
GenBank | AK101603 | 0.0 | AK101603.1 Oryza sativa Japonica Group cDNA clone:J033051K20, full insert sequence. | |||
GenBank | AK102857 | 0.0 | AK102857.1 Oryza sativa Japonica Group cDNA clone:J033110P03, full insert sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628849.1 | 0.0 | SCARECROW-LIKE protein 7 | ||||
Swissprot | Q53K16 | 0.0 | SCL7_ORYSJ; SCARECROW-LIKE protein 7 | ||||
TrEMBL | A0A0D9YYY5 | 0.0 | A0A0D9YYY5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GT20 | 0.0 | A0A0E0GT20_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2XLI9 | 0.0 | A2XLI9_ORYSI; Uncharacterized protein | ||||
STRING | OGLUM02G35110.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | OS03T0723000-01 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA03G33890.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8569 | 37 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66770.1 | 1e-143 | GRAS family protein |
Publications ? help Back to Top | |||
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