PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G28530.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 333aa    MW: 35010.1 Da    PI: 9.5696
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G28530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.13.8e-30149205158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      d+p+YVNaKQy++Il+RR +Rak+++e++l  k+rkpylheSRh+hA+rR+RgsgGrF
  ONIVA03G28530.1 149 DAPIYVNAKQYEGILRRRRARAKAQRENRL-VKGRKPYLHESRHRHAMRRARGSGGRF 205
                      68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.8E-33147208IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.01148208IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.5E-27151205IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.4E-23151173IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.4E-23182205IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MLSFKQSHEG FGHVAAAGAG PQQQQQPWWA GSQLLYGEAS PEEAALRDGG QFQVVPGGRA  60
ALDPAAPEPE KTAVPAMPKR GGGGAPEVLK FSVFSGNLEP GDTGEKNREH SATIAMQSPL  120
PEYNGHFELG LGQSMSGGRM LLPLNAPADA PIYVNAKQYE GILRRRRARA KAQRENRLVK  180
GRKPYLHESR HRHAMRRARG SGGRFLNTKK EATAAGCGGS SKTPLASLVS PADVAHRPGS  240
RGGGGRASSL SGSDVSSPGG GMYDHHRHDD ADAVDHYNSI DHHLRTPFFT PLPIIMDSGG  300
GGGDHASHSA AAVAAPFRWA TAAGDGCCEL LKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A7e-18149207261HAPB protein
4g92_A7e-18149207261HAPB protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189198RHRHAMRRAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880340.0AB288034.1 Oryza sativa Japonica Group OsHAP2H mRNA for HAP2 subunit of HAP complex, complete cds.
GenBankAK1063980.0AK106398.1 Oryza sativa Japonica Group cDNA clone:002-102-F12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628114.10.0nuclear transcription factor Y subunit A-10 isoform X2
TrEMBLA0A0E0GR090.0A0A0E0GR09_ORYNI; Uncharacterized protein
STRINGONIVA03G28530.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.13e-22nuclear factor Y, subunit A6