PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G28200.2

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 812aa MW: 89492.6 Da PI: 7.0942

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G28200.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	28.7	2.6e-09	568	594	15	41
TCR 15 kkYCeCfaagkkCseeCkCedCkNkee 41 k YCeCfa++++Cse+C+C +C+N+++ ONIVA03G28200.2 568 KSYCECFASEVYCSESCSCRGCFNDHS 594 99**********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	12.249	560	644	IPR005172	CRC domain
SMART	SM01114	1.7E-4	561	595	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	8.3E-6	568	592	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 812 aa Download sequence Send to blast
MSIKICPGEY DANITREEVV WSRRVLAAKD GTIWARLFMV DREGCWSLSS ILRQWLGSET 60 NKEGARGGGR FEVVATTCEV TIVVGCMKEM SAGQFYCKGE ERVDGGAGVK RRGAPQRKGD 120 SPFLNFVKSL SPISSSQPLD AVPNLQMIKS SDLVHIPSIF TPPEFTHFGL MNTSAKPCQD 180 GLSPYCHMTQ IGRSSCIKQS GPMTIASKNC SIDRSLSQAY HDSPDNASIL PTNLAQRIQL 240 SSDTLGSDKR HGIAGKTDHE TAQKHAKLSC FDQRCLDKMK QLTSGMNVQK RDLAKTHNDE 300 ITACDWDYLG TQYDSSVVPE SDLRFETAEL LLETPKNGDA MPGKSFLPIV EANLENSRRK 360 LFQGSADCYS QSAVDNIHAY CTSRGKEVAT NHVSGILPCP RESQLIPDHH FSDSLEVPSD 420 YMAMNPSAVS QHLRGLHRRS LFNDKVRDPT MGVQSASNLG ASTCATRHRS IPDDNYSKLV 480 GSPVCALPNV DLHLVRMTEE MVPYNMTCTV NSTLSISEHN TEISTVVPVN QLAPNTSEMN 540 THNQGDYSSQ ATMPTSAGNS GQENPKRKSY CECFASEVYC SESCSCRGCF NDHSHEETVL 600 STRNRIESRN PLAFAPKVIR TCGPGLEFGE DSNATPASSR HKRGIERFET KEIERADRKM 660 KDHPKEEQSE MDKYHALCEI WGVRSTENLF TTPSMDSRRA FALFPSECPK SSLTSSTRTS 720 SHLHFPTRTD VLLSPFGSYT QMLLGNEASD MLLQQGDSSC TASLRIASPN KKRVSPLRTG 780 NTLSPTCRKE LGLKSIIPPF PSLTGDANSE LQ

Sequence ? help Back to Top

Protein Sequence Length: 812 aa Download sequence Send to blast

MSIKICPGEY DANITREEVV WSRRVLAAKD GTIWARLFMV DREGCWSLSS ILRQWLGSET  60
NKEGARGGGR FEVVATTCEV TIVVGCMKEM SAGQFYCKGE ERVDGGAGVK RRGAPQRKGD  120
SPFLNFVKSL SPISSSQPLD AVPNLQMIKS SDLVHIPSIF TPPEFTHFGL MNTSAKPCQD  180
GLSPYCHMTQ IGRSSCIKQS GPMTIASKNC SIDRSLSQAY HDSPDNASIL PTNLAQRIQL  240
SSDTLGSDKR HGIAGKTDHE TAQKHAKLSC FDQRCLDKMK QLTSGMNVQK RDLAKTHNDE  300
ITACDWDYLG TQYDSSVVPE SDLRFETAEL LLETPKNGDA MPGKSFLPIV EANLENSRRK  360
LFQGSADCYS QSAVDNIHAY CTSRGKEVAT NHVSGILPCP RESQLIPDHH FSDSLEVPSD  420
YMAMNPSAVS QHLRGLHRRS LFNDKVRDPT MGVQSASNLG ASTCATRHRS IPDDNYSKLV  480
GSPVCALPNV DLHLVRMTEE MVPYNMTCTV NSTLSISEHN TEISTVVPVN QLAPNTSEMN  540
THNQGDYSSQ ATMPTSAGNS GQENPKRKSY CECFASEVYC SESCSCRGCF NDHSHEETVL  600
STRNRIESRN PLAFAPKVIR TCGPGLEFGE DSNATPASSR HKRGIERFET KEIERADRKM  660
KDHPKEEQSE MDKYHALCEI WGVRSTENLF TTPSMDSRRA FALFPSECPK SSLTSSTRTS  720
SHLHFPTRTD VLLSPFGSYT QMLLGNEASD MLLQQGDSSC TASLRIASPN KKRVSPLRTG  780
NTLSPTCRKE LGLKSIIPPF PSLTGDANSE LQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC120505	0.0	AC120505.7 Oryza sativa chromosome 3 BAC OSJNBa0066H15 genomic sequence, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025879709.1	0.0	protein tesmin/TSO1-like CXC 2
TrEMBL	A0A0E0GQW7	0.0	A0A0E0GQW7_ORYNI; Uncharacterized protein
STRING	ONIVA03G28200.2	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14774	19	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	1e-26	TESMIN/TSO1-like CXC 2