PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Basic Information? help Back to Top

TF ID

ONIVA03G28200.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 782aa MW: 86232 Da PI: 7.2605

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G28200.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	28.8	2.5e-09	538	564	15	41
TCR 15 kkYCeCfaagkkCseeCkCedCkNkee 41 k YCeCfa++++Cse+C+C +C+N+++ ONIVA03G28200.1 538 KSYCECFASEVYCSESCSCRGCFNDHS 564 99**********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	12.249	530	614	IPR005172	CRC domain
SMART	SM01114	1.7E-4	531	565	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	8.0E-6	538	562	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 782 aa Download sequence Send to blast
MSIKICPGEY DANITREEVV WSRRVLAAKD GTIWARLFMV DREGCWSLSS ILRQWLGSET 60 NKEGARGGGR FEVVATTCEV TIVVGCMKEM SAGQFYCKGE ERVDGGAGVK RRGAPQRKGD 120 SPFLNFVKSL SPISSSQPLD AVPNLQMIKS SDLVHIPSIF TPPEFTHFGL MNTSAKPCQD 180 GLSPYCHMTQ IGRSSCIKQS GPMTIASKNC SIDRSLSQAY HDSPDNASIL PTNLAQRIQL 240 SSDTLGSDKR HGIAGKTDHE TAQKHAKLSC FDQRCLDKMK QLTSGMNVQK RDLAKTHNDE 300 ITACDWDYLG TQYDSSVVPE SDLRFETAEL LLETPKNGDA MPGKSFLPIV EANLENSRRK 360 LFQGSADCYS QSAVDNIHAY CTSRGKEVAT NHVSGILPCP RESQLIPDHH FSDSLEVPSD 420 YMAMNPSAVS QHLRGLHRRS LFNDKVRDPT MGVQSASNLG ASTCATRHRS IPDDNYSKLV 480 GSPVCALPNV DLHLVRMTEE MLAPNTSEMN THNQGDYSSQ ATMPTSAGNS GQENPKRKSY 540 CECFASEVYC SESCSCRGCF NDHSHEETVL STRNRIESRN PLAFAPKVIR TCGPGLEFGE 600 DSNATPASSR HKRGIERFET KEIERADRKM KDHPKEEQSE MDKYHALCEI WGVRSTENLF 660 TTPSMDSRRA FALFPSECPK SSLTSSTRTS SHLHFPTRTD VLLSPFGSYT QMLLGNEASD 720 MLLQQGDSSC TASLRIASPN KKRVSPLRTG NTLSPTCRKE LGLKSIIPPF PSLTGDANSE 780 LQ

Sequence ? help Back to Top

Protein Sequence Length: 782 aa Download sequence Send to blast

MSIKICPGEY DANITREEVV WSRRVLAAKD GTIWARLFMV DREGCWSLSS ILRQWLGSET  60
NKEGARGGGR FEVVATTCEV TIVVGCMKEM SAGQFYCKGE ERVDGGAGVK RRGAPQRKGD  120
SPFLNFVKSL SPISSSQPLD AVPNLQMIKS SDLVHIPSIF TPPEFTHFGL MNTSAKPCQD  180
GLSPYCHMTQ IGRSSCIKQS GPMTIASKNC SIDRSLSQAY HDSPDNASIL PTNLAQRIQL  240
SSDTLGSDKR HGIAGKTDHE TAQKHAKLSC FDQRCLDKMK QLTSGMNVQK RDLAKTHNDE  300
ITACDWDYLG TQYDSSVVPE SDLRFETAEL LLETPKNGDA MPGKSFLPIV EANLENSRRK  360
LFQGSADCYS QSAVDNIHAY CTSRGKEVAT NHVSGILPCP RESQLIPDHH FSDSLEVPSD  420
YMAMNPSAVS QHLRGLHRRS LFNDKVRDPT MGVQSASNLG ASTCATRHRS IPDDNYSKLV  480
GSPVCALPNV DLHLVRMTEE MLAPNTSEMN THNQGDYSSQ ATMPTSAGNS GQENPKRKSY  540
CECFASEVYC SESCSCRGCF NDHSHEETVL STRNRIESRN PLAFAPKVIR TCGPGLEFGE  600
DSNATPASSR HKRGIERFET KEIERADRKM KDHPKEEQSE MDKYHALCEI WGVRSTENLF  660
TTPSMDSRRA FALFPSECPK SSLTSSTRTS SHLHFPTRTD VLLSPFGSYT QMLLGNEASD  720
MLLQQGDSSC TASLRIASPN KKRVSPLRTG NTLSPTCRKE LGLKSIIPPF PSLTGDANSE  780
LQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC120505	0.0	AC120505.7 Oryza sativa chromosome 3 BAC OSJNBa0066H15 genomic sequence, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025879709.1	0.0	protein tesmin/TSO1-like CXC 2
TrEMBL	A0A0E0GQW6	0.0	A0A0E0GQW6_ORYNI; Uncharacterized protein
STRING	ONIVA03G28200.2	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	9e-26	Tesmin/TSO1-like CXC domain-containing protein