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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
ONIVA03G25220.6 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family |
AP2 |
| Protein Properties |
Length: 383aa MW: 41678.4 Da PI: 7.1972 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ONIVA03G25220.6 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 22.7 | 2.5e-07 | 121 | 142 | 1 | 22 |
AP2 1 sgykGVrwdkkrgrWvAeIrdp 22
s+y+GV++++++grW+++I+ +
ONIVA03G25220.6 121 SQYRGVTFYRRTGRWESHIWAY 142
78*****************984 PP
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| 2 | AP2 | 42.7 | 1.4e-13 | 194 | 244 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+ +++g
ONIVA03G25220.6 194 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDRAAIRFNG 244
89********.7******...5...334336**********99**********99987 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0016021 | Cellular Component | integral component of membrane |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 383 aa
Download sequence Send
to blast |
MVLDLNVESP GGSAATSSSS TPPPPPDGGG GGYFRFDLLG GSPDEDGCSP PVMTRQLFPS 60
PSAVVALAGD GSSTPPPTMP TPAAAGEGPW PRRAADLGVA QSQRSPAGGK KSRRGPRSRS 120
SQYRGVTFYR RTGRWESHIW AYDRAAIKFR GLDADINFNL NDYEDDLKQM RNWTKEEFVH 180
ILRRQSTGFA RGSSKYRGVT LHKCGRWEAR MGQLLGKKYI YLGLFDSEIE AARAYDRAAI 240
RFNGREAVTN FDPSSYDGDV LPETDNEVVD GDIIDLNLRI SQPNVHELKS DGTLTGFQLN 300
CDSPEASSSV VTQEVPMEKR PVLGPQSFPT SWSWQMQGSP LPLLPTAASS GFSTGTVADA 360
ARPPSSRPHP FPGHHQFYFP PTT
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK111874 | 0.0 | AK111874.1 Oryza sativa Japonica Group cDNA clone:J033046C12, full insert sequence. |
| GenBank | CT831975 | 0.0 | CT831975.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106E13, full insert sequence. |
| GenBank | DQ374663 | 0.0 | DQ374663.1 Oryza sativa (japonica cultivar-group) supernumerary bract mRNA, complete cds. |
| Publications
? help Back to Top |
- Lee DY,An G
Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
Plant J., 2012. 69(3): p. 445-61
[PMID:22003982] - Wang L, et al.
Coordinated regulation of vegetative and reproductive branching in rice.
Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
[PMID:26631749] - Dai Z,Wang J,Zhu M,Miao X,Shi Z
OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
Front Plant Sci, 2016. 7: p. 1891
[PMID:28066457]
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