PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G20220.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 351aa    MW: 36420.6 Da    PI: 6.391
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G20220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.92e-19104157356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k+++++ eq+++Le+ Fe+ +++  e++++LA+ lgL+ rqV +WFqNrRa++k
  ONIVA03G20220.1 104 KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWK 157
                      456899***********************************************9 PP
2HD-ZIP_I/II127.84.6e-41103194192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      ekkrrls eqv++LE+sFe+ +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkd++aL+r++da ++en++L + +++L++e+ 
  ONIVA03G20220.1 103 EKKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDFDALRRQLDAARAENDALLSLNSKLHAEIV 194
                      69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-1982160IPR009057Homeodomain-like
SuperFamilySSF466891.11E-1993161IPR009057Homeodomain-like
PROSITE profilePS5007117.31399159IPR001356Homeobox domain
SMARTSM003891.8E-19102163IPR001356Homeobox domain
PfamPF000461.2E-16104157IPR001356Homeobox domain
CDDcd000862.36E-17104160No hitNo description
PRINTSPR000315.1E-6130139IPR000047Helix-turn-helix motif
PROSITE patternPS000270134157IPR017970Homeobox, conserved site
PRINTSPR000315.1E-6139155IPR000047Helix-turn-helix motif
PfamPF021831.6E-9159198IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MASNGAAAGA MAPFFPPNFL LQMQQPLPLH HQHLQDHAHG GHGGHHLLPP PPPSLSPFLP  60
DLAMDAPPPP MYEASGGDGG GGGAASEDEE DGCGGGGGGG GGEKKRRLSV EQVRTLERSF  120
ESGNKLEPER KAQLARALGL QPRQVAIWFQ NRRARWKTKQ LEKDFDALRR QLDAARAEND  180
ALLSLNSKLH AEIVALKGGA AAAGGGGSSC RQEAASELIN LNVKETEASC SNRSENSSEI  240
NLDISRPAPP PPPPPANESP VNRGIPFYAS IGRGGAGGVD IDQLLLRGGH SPSPAAVTTP  300
PPPKMELGIT GNGGGADAVA AGAGSFGGLL CGAVDEQPPF WPWADGHHHF H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151159RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8377490.0CT837749.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA049M06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613423.10.0homeobox-leucine zipper protein HOX23-like
SwissprotA2Z7340.0HOX23_ORYSI; Homeobox-leucine zipper protein HOX23
SwissprotQ94GL50.0HOX23_ORYSJ; Homeobox-leucine zipper protein HOX23
TrEMBLA0A0E0GN230.0A0A0E0GN23_ORYNI; Uncharacterized protein
STRINGONIVA03G20220.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.17e-46HD-ZIP family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]