 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
ONIVA03G07980.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
bHLH |
| Protein Properties |
Length: 340aa MW: 36444.4 Da PI: 5.65 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ONIVA03G07980.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 33.2 | 9.5e-11 | 264 | 304 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq
ONIVA03G07980.1 264 RKRRERINERLKILQNLIPNG-----TKVDISTMLEEAVHYVKFLQ 304
9******************97.....8******************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 340 aa
Download sequence Send
to blast |
MESSEASWHS FDPSVAMEDS EAMAQLLGVQ YFGNDQEQQQ PAAAAPPAMY WPAHDAADQY 60
YGSAPYCYMQ QQQHYGCYDG GAMVAGGDFF VPEEQLVADP SFMVDLNLEF EDQHGGDAGG 120
AGSSAAAAAA ATKMTPVCKR KVEDHKDESC TDNVARKKAR STAATVVQKK GNKNAQSKKA 180
QKGACSRSSN QKESNGGGDG GNVQSSSTNY LSDDDSLSLE MTSCSNVSSA SKKSSLSSPA 240
TGHGGAKARA GRGAATDPQS LYARKRRERI NERLKILQNL IPNGTKVDIS TMLEEAVHYV 300
KFLQLQIKLL SSDDMWMFAP IAYNGVNVGL DLKISPPQQQ
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC123568 | 0.0 | AC123568.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1345H02, from chromosome 3, complete sequence. |
| GenBank | AC132214 | 0.0 | AC132214.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0040M05, from chromosome 3, complete sequence. |
| GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
