PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G05390.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 280aa    MW: 30926.5 Da    PI: 8.2562
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G05390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA106.62e-33178234158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep+YVNaKQy++Il+RRq Rakle+e+kl  k+rkpylheSRh+hA++R+Rg+gGrF
  ONIVA03G05390.1 178 EEPIYVNAKQYHAILRRRQLRAKLEAENKL-VKNRKPYLHESRHQHAMKRARGTGGRF 234
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.8E-39176237IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.283177237IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.9E-29179234IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.4E-25180202IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860182202IPR018362CCAAT-binding factor, conserved site
PRINTSPR006168.4E-25211234IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MAKASIQAEE REKERGFALA EERSKVRSEE AAREEVCRRG DMLPPHLTEN GTVMIQFGHK  60
MPDYESSATQ STSGSPREVS GMSEGSLNEQ NDQSGNLDGY TKSDEGKMMS ALSLGKSETV  120
YAHSEPDCSQ PFGISYPYAD SFYGGAVATY GTHAIMHPQI VGVMSSSRVP LPIEPATEEP  180
IYVNAKQYHA ILRRRQLRAK LEAENKLVKN RKPYLHESRH QHAMKRARGT GGRFLNTKQQ  240
PEASDGGTPR LVSANGVVFS KHEHSLSSSD LHHRRAKEGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-24177248174NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8327050.0CT832705.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105G23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631822.11e-177nuclear transcription factor Y subunit A-7
TrEMBLA0A0E0GHJ60.0A0A0E0GHJ6_ORYNI; Uncharacterized protein
STRINGONIVA03G05390.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.12e-44nuclear factor Y, subunit A6