PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G05120.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 363aa    MW: 39209.3 Da    PI: 6.9045
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G05120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.6e-18127180356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  ONIVA03G05120.1 127 KKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 180
                      4568999**********************************************9 PP
2HD-ZIP_I/II128.92e-41126217192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      ekkrrl+ eqv++LE++Fe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aLkr++da+k+en++L +++++L++e+ 
  ONIVA03G05120.1 126 EKKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKAENDALLNHNKKLQAEIV 217
                      69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-19105183IPR009057Homeodomain-like
SuperFamilySSF466891.5E-19119184IPR009057Homeodomain-like
PROSITE profilePS5007117.41122182IPR001356Homeobox domain
SMARTSM003891.2E-17125186IPR001356Homeobox domain
CDDcd000869.35E-17127183No hitNo description
PfamPF000462.1E-15127180IPR001356Homeobox domain
PRINTSPR000311.3E-5153162IPR000047Helix-turn-helix motif
PROSITE patternPS000270157180IPR017970Homeobox, conserved site
PRINTSPR000311.3E-5162178IPR000047Helix-turn-helix motif
PfamPF021834.8E-14182222IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MASNGMASSP SSFFPPNFLL HMAQQQAAPP HDPQEHHHHH HHGHHGHHHE QQQHHHHLGP  60
PPPPPPHPHN PFLPSSAQCP SLQEFRGMAP MLGKRPMSYG DGGGGGDEVN GGGEDELSDD  120
GSQAGEKKRR LNVEQVRTLE KNFELGNKLE PERKMQLARA LGLQPRQVAI WFQNRRARWK  180
TKQLEKDYDA LKRQLDAVKA ENDALLNHNK KLQAEIVALK GREAASELIN LNKETEASCS  240
NRSENSSEIN LDISRTPPPD AAALDAAPTA HHHHHGGGGG GGGGGGMIPF YTSIARPASG  300
GGVDIDQLLH SSSGGAGGPK MEHHGGGGNV QAASVDTASF GNLLCGVDEP PPFWPWPDHQ  360
HFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174182RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0735560.0AC073556.11 Oryza sativa chromosome 3 BAC OSJNBa0091P11 genomic sequence, complete sequence.
GenBankAC1444910.0AC144491.1 Oryza sativa Japonica Group chromosome 3 clone OSJNAa0091P11, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629266.10.0homeobox-leucine zipper protein HOX21
SwissprotQ8S7W90.0HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLA0A0E0GHG00.0A0A0E0GHG0_ORYNI; Uncharacterized protein
STRINGONIVA03G05120.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-70HD-ZIP family protein