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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G02550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 303aa MW: 32520.9 Da PI: 7.6702 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.6 | 4e-10 | 121 | 162 | 5 | 50 |
AP2 5 GVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaar 50 GV+++ grW++ rd + r +lg+f ++eeA++a++a+ ONIVA03G02550.1 121 GVYQRQ-PGRWAVDFRD----SqLKVRQWLGTFPSEEEARAAYDAFE 162 9**998.9******888....23459*******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.115 | 118 | 179 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.0E-4 | 121 | 168 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-9 | 121 | 166 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-11 | 121 | 167 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-6 | 121 | 162 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MVAFRRIRIY YSDPDATDSD SDSDSDSDSA DAGDHDISSR SSRTNAAARR KVIVISLSRK 60 KGRSSSQSGR HYRRRRSEIP AAAAKAVEAE DWPSSSDGMR RGAVAAARSA SAAAKKGSRG 120 GVYQRQPGRW AVDFRDSQLK VRQWLGTFPS EEEARAAYDA FEVQVRASLS CGGAGAVAPS 180 PARVKIQLPA PRRVFGRRKK TQTTTTTTES SSQATVSASP SSEAAALPSS SASAAMPPLL 240 NPPPFVVDPF LGEDDHLAAD DDRFGFGLAD LGHLPLPFLD DNDMDFKLSD SDDLSSLFDI 300 GFM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 58 | 75 | RKKGRSSSQSGRHYRRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025875765.1 | 1e-131 | ethylene-responsive transcription factor ERF073 | ||||
TrEMBL | A0A0E0GGG4 | 0.0 | A0A0E0GGG4_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G02550.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14003 | 20 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-07 | related to AP2 11 |