PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G01340.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 1360aa    MW: 153943 Da    PI: 7.2212
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G01340.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.89.5e-2310981159159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY    1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                       +dDg++W KYGqK++ g+ +prsY+rC ++   gC ++k+v+ +++d ++++++Y geH+++
  ONIVA03G01340.2 1098 VDDGFSWVKYGQKDILGTMYPRSYFRCIHRqtkGCLATKQVQPTDDDHQILDVIYYGEHTCD 1159
                       59**************************998889**************************97 PP
2WRKY78.86.2e-2512191280159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY    1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                       ldDgy+WrKYG K++ g+++prsY+rCt++   gC ++k+++r + dp +++++Y+g+H+++
  ONIVA03G01340.2 1219 LDDGYSWRKYGLKDILGAKYPRSYFRCTHRntqGCVATKQIQRRDGDPLLFDVVYHGDHTCS 1280
                       59***************************98889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd147984.21E-132132No hitNo description
SuperFamilySSF525401.25E-55255526IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3009.1E-17276443IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009316.2E-53279552IPR002182NB-ARC
PRINTSPR003641.1E-15291306No hitNo description
PRINTSPR003641.1E-15363377No hitNo description
PRINTSPR003641.1E-15460474No hitNo description
SuperFamilySSF520581.46E-24591966IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.1E-18679827IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003641.1E-15816832No hitNo description
Gene3DG3DSA:3.80.10.101.1E-18871917IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS5081119.47410931161IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.5E-2310931160IPR003657WRKY domain
SuperFamilySSF1182905.23E-2210961160IPR003657WRKY domain
SMARTSM007747.8E-3610981160IPR003657WRKY domain
PfamPF031067.0E-2310991159IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.8E-2612061280IPR003657WRKY domain
SuperFamilySSF1182903.27E-2312131280IPR003657WRKY domain
PROSITE profilePS5081121.06912141277IPR003657WRKY domain
SMARTSM007741.8E-3712191281IPR003657WRKY domain
PfamPF031061.5E-2312201279IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1360 aa     Download sequence    Send to blast
MEGTVFNLPG RLEELLCHHG SMLPKGADEE IPLIKQDLEE IISILHGHSE PKLEDHGMVV  60
RCWMKEVREL SYDIEDSIDQ YKHAARSQNR PNIRHRKFNR WRGNKIPCIP QKLKQRLWMA  120
NKIREFSLRA QEALQRHAMY NNLGGVASTA STTRGDVCSA TPLHPTQTQF REHVDNVRSV  180
SIEADGMEAA LNDLNKLKNL LAGIPTASLV QFREHADKVR GIHTDIEAIL NKLENIPPGI  240
TITTTTRGDV SSTSSRQPTR FMESTCHVGI DAAMDQLENL IDVCGEEKLK VVSIVGVGGV  300
GKTTLANKLY HKLRWQFECW AFVRSSQKTD MRRLLINILS QVRPHQSPDN WKVHSLISSI  360
RTYLQDKRFL IVIDDLWATS TWDIIKCALP EGNKSSRILT TTEIEDLALQ SCSYDLKFIF  420
KMIPFGEDDS RKLLFSIVFG SHSKCPPEVS ETLYDIVRKC GGLPLAIVTV ASLLASQLDK  480
LEQWDYINKS LGYSLMANPT LEGMKQLLNL CYSNLPQHLK ACMLYLSMYQ GDHIIWKDDL  540
VNQWIAEGFI CATEEHDKEE ISRGYFDELV GRKIIQPVHI DDSGEVLSCV VHHIVLNFVT  600
YKSIEENFII AIDHSQATIR FADKVRRLSI HFSNVEDAPP PTNMRLFQVR TIAFFGVLKY  660
MPFIMEFRLI KVLFLHFLGD EDSTGIVDLT KISELVRLRY LKVTSNATVK LPTRLQGLQY  720
LETLKIDGKI SEVPSDIIHL PGLLHLTLPA KTNLPTGISH VTSLRTIGYF DLSCNSVENL  780
WRLGELTNLW DLQLTYSEIH SDNLKNNMKY LGPILGKLRN LKSITLSADG SSCPDTLRID  840
RDTKTRIYVD GWSSVSSPPA LLQRFELLPC VCIFSNLPNW IGQLGNLCIL KIGIREVTSN  900
NIDVLGVLPE LIVLSLYVHT KPAERIVFDN AGFSILRYFK FICSVAWMKF EVGAMPSLRK  960
LKLGFDVHRA DQHDIIPVGI EHLSGLEEIS AKIRVACSAH DHCKRFAESA LSNAFMMHPG  1020
RPSVNIRCVD WTFDGKDDDN VRTQEEEHRT LQKQHHTAKE GSNEKSPVKQ RDPREGAHKS  1080
VDGRETLRRI RVKVSSTVDD GFSWVKYGQK DILGTMYPRS YFRCIHRQTK GCLATKQVQP  1140
TDDDHQILDV IYYGEHTCDQ SARSDDRQPK SSRPAASSNL QEPQQPGLEQ SRPAAKRRRK  1200
TVRWKTQVRV SSVQDVGPLD DGYSWRKYGL KDILGAKYPR SYFRCTHRNT QGCVATKQIQ  1260
RRDGDPLLFD VVYHGDHTCS ERASLNEQVT WPRSSASSTE QSSTITYTAA AGSVEDDEEG  1320
VTSATNFLSM DDMLDLGGGD VIDMDFPSFD FDAIDALLLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6s2p_N7e-4326860611347NRC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0660530.0AK066053.1 Oryza sativa Japonica Group cDNA clone:J013052I15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617274.10.0disease resistance protein RGA5-like
RefseqXP_025877036.10.0disease resistance protein RGA5-like
TrEMBLA0A0E0GG080.0A0A0E0GG08_ORYNI; Uncharacterized protein
STRINGONIVA03G01340.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.21e-32WRKY family protein