![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA02G36910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 22624.2 Da PI: 6.6764 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.5 | 1.4e-17 | 16 | 67 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ykGVr++k +g+Wv+eIr p++ r r++lg+++++e+Aa+a +aa l+g+ ONIVA02G36910.1 16 KKYKGVRRRK-WGKWVSEIRLPNS---RDRIWLGSYDSPEKAARAFDAAFVTLRGH 67 59*****998.**********933...5********************98888876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.73E-24 | 16 | 79 | No hit | No description |
SuperFamily | SSF54171 | 1.83E-18 | 17 | 79 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-28 | 17 | 83 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-26 | 17 | 79 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-10 | 17 | 65 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.799 | 17 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-9 | 18 | 29 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-9 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence Send to blast |
MSSSSPVAAS PPEMEKKYKG VRRRKWGKWV SEIRLPNSRD RIWLGSYDSP EKAARAFDAA 60 FVTLRGHGAA GADLNFPDSP PSCDARSSDP RQVQAAALSH ANRAHVTPQQ AAAALMSPPS 120 LSPPPGFATG SEVVAPAVRA DGSIDWRPVM AHPPPLYSPP GWGGGHAYDF LQPPPPSPPL 180 PSCDDDMVDV VDESSASLWS FDTRDSYFRY |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 18 | 24 | KGVRRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624935.1 | 1e-148 | ethylene-responsive transcription factor ERF018 | ||||
TrEMBL | A0A0E0GDN9 | 1e-148 | A0A0E0GDN9_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA02G36910.1 | 1e-148 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G19210.1 | 1e-33 | ERF family protein |