PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G34350.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 345aa    MW: 37770.4 Da    PI: 4.4431
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G34350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.61.4e-2079132356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k++++t+eq++ Le+ Fe+++++  e+++eLA+klgL+ rqV vWFqNrRa++k
  ONIVA02G34350.1  79 KKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWK 132
                      5678*************************************************9 PP
2HD-ZIP_I/II132.51.5e-4278170193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      ekkrrl+ eqv+lLE+sFeee+kLeperK+elar+LglqprqvavWFqnrRAR+ktkqlE+d+++Lk+++dal++++++L +++++L++++++
  ONIVA02G34350.1  78 EKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHRLHSQVMS 170
                      69**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.96E-2073136IPR009057Homeodomain-like
PROSITE profilePS5007118.2274134IPR001356Homeobox domain
SMARTSM003892.0E-2077138IPR001356Homeobox domain
CDDcd000861.35E-2079135No hitNo description
PfamPF000467.9E-1879132IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.0E-2280141IPR009057Homeodomain-like
PRINTSPR000312.3E-6105114IPR000047Helix-turn-helix motif
PROSITE patternPS000270109132IPR017970Homeobox, conserved site
PRINTSPR000312.3E-6114130IPR000047Helix-turn-helix motif
PfamPF021831.8E-18134176IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MESGRLIFST AGSGAGQMLF LDCGAGGGGG GVGGGAMFHR GARPVLGMEE GGRGVKRPFF  60
TTPDELLEEE YYDEQLPEKK RRLTPEQVHL LERSFEEENK LEPERKTELA RKLGLQPRQV  120
AVWFQNRRAR WKTKQLERDF DRLKASFDAL RADHDALLQD NHRLHSQVMS LTEKLQEKET  180
TTEGSAGAAV DVPGLPAAAD VKVAVPDAEE PALEEAAAAF EEQQEQQVKA EDRLSTGSGG  240
SAVVDTDAQL VVGCGRQHLA AVDSSVESYF PGGDEYHDCV MGPMDHAAGG IQSEEDDGAG  300
SDEGCSYYAD DAVVLFADHG HHHHHQHADD DEEDGQQISC WWMWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126134RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1195920.0AK119592.1 Oryza sativa Japonica Group cDNA clone:002-117-D05, full insert sequence.
GenBankCU4059600.0CU405960.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C104H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626254.10.0homeobox-leucine zipper protein HOX16 isoform X2
SwissprotA2X9800.0HOX16_ORYSI; Homeobox-leucine zipper protein HOX16
TrEMBLA0A0E0GCP40.0A0A0E0GCP4_ORYNI; Uncharacterized protein
STRINGONIVA02G34350.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-58homeobox 1