PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G33600.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 577aa    MW: 61236.1 Da    PI: 5.9907
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G33600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.3e-173382255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  ONIVA02G33600.1 33 QYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 82
                     69****998.**********9...336************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-293290IPR001471AP2/ERF domain
SMARTSM003804.0E-343396IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-183391IPR016177DNA-binding domain
PfamPF008471.9E-103382IPR001471AP2/ERF domain
PROSITE profilePS5103221.5753390IPR001471AP2/ERF domain
CDDcd000181.23E-163392No hitNo description
PRINTSPR003672.5E-83445IPR001471AP2/ERF domain
PRINTSPR003672.5E-85672IPR001471AP2/ERF domain
Gene3DG3DSA:3.90.960.109.6E-14257309IPR007214YbaK/aminoacyl-tRNA synthetase-associated domain
SuperFamilySSF558269.16E-24261419IPR007214YbaK/aminoacyl-tRNA synthetase-associated domain
Gene3DG3DSA:3.90.960.102.2E-28310422IPR007214YbaK/aminoacyl-tRNA synthetase-associated domain
PfamPF040731.4E-7313406IPR007214YbaK/aminoacyl-tRNA synthetase-associated domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006450Biological Processregulation of translational fidelity
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0002161Molecular Functionaminoacyl-tRNA editing activity
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MVKSGQEAAP GSGGNAAAAA ARQGGGGGGR GRQYKGVRMR SWGSWVSEIR APNQKTRIWL  60
GSYSTAEAAA RAYDAALLCL KGSAADLNFP VHLPFHIPAA AMSPKSIQRV AAAAAANATS  120
PLQHHSGAAS FATATGGYNP AAAPTTPPCS YGDMSSCSAV SSPETANYYG ADHDMVARED  180
DVDYAALADI DAFFQSPKCM DYSMMDPCST FFSPAPESLA AEWEDEASHP NPRGRDSLAF  240
ALLVSFLPSA AAAAAARAMG YTKEQLLARL QELNIEFSCY DHPVVLTVEE QAKHVGHLGG  300
ALSKNLLLKR LGLGKGGLRM APEENLLEVL QVPLGCVTPF ALLNESASFF HGYAIAFLTD  360
SYNCVFASSA VSLLLDQGFK SKQSCYFHPL TNDVTIALSS SNLDKFLMSI GRQPAYVDLE  420
ASPVVGKDNP PDLADLVPSG VPNSAEPIEK VTPTNVPRQN DVPKEKTCLP EVKAKPKVQN  480
KGAEKTQSKI PTNGANVEKF VNDVFDIMSP LFLSEVSKKL NVKQEELSSI FDGFKEQATI  540
DLESVTTSLK NAAYTAGFEA GFETMLNSGL KGQASRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1vjf_A1e-1426242615180DNA-binding protein, putative
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623167.10.0prolyl-tRNA synthetase associated domain-containing protein 1
TrEMBLA0A0E0GCD80.0A0A0E0GCD8_ORYNI; Uncharacterized protein
STRINGONIVA02G33600.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP841433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.15e-26ERF family protein