PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G22870.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 442aa    MW: 47771.6 Da    PI: 9.6365
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G22870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.0009327349123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C +C+k+F ++  L  H++ H
  ONIVA02G22870.1 327 FSCCYCPKRFQSSQALGGHQNAH 349
                      89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5016235.26139208IPR020588DNA recombination and repair protein RecA-like, ATP-binding domain
Gene3DG3DSA:3.40.50.3001.0E-5441284IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525403.97E-3742283IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF084231.7E-3842283IPR013632DNA recombination and repair protein Rad51, C-terminal
PRINTSPR018741.3E-65280No hitNo description
PRINTSPR018741.3E-6160184No hitNo description
PROSITE profilePS5015710.201327354IPR007087Zinc finger, C2H2
PROSITE patternPS000280329349IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007126Biological Processmeiotic nuclear division
GO:0045003Biological Processdouble-strand break repair via synthesis-dependent strand annealing
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
GO:0008094Molecular FunctionDNA-dependent ATPase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MRPAAPARHP SAAASSSSST NSQQEPRPEN PLLLLPSSRA GKLSLGCPVL DRLLSGGLPP  60
ASVTEIAGES ASGKTQLCLQ LALLAPLSPL SASCLFLHSD LPFPLRRLRG LAPKSRPDLL  120
DHVLVAAAHS PSDLISLLSR AQRLLAHPGR LPPVRLILVD SIASLFRADF DASPADLKRR  180
SALFFRISAK LKELAHRHRC VVVVTNQVVD VVEGEAGNTV AWSSGRRVSP ALGIAWANCV  240
NTRLFLTRDA DGRGCARRRM NVAFAPHLPE RACEFVIRRD GVFGVEPSGR VCYNSAPEFM  300
GEQMDNEELN LSLSLQPSYP SRFQTEFSCC YCPKRFQSSQ ALGGHQNAHK LQRNLAKRNR  360
EAFLSISQRK GANAGIKDGS SALSAESISK ISSGKKHHKE AWQVMQGSCG SSSSGTVMHK  420
SIEQDVEDED LSNGTIDLSL KL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lb4_A8e-23412825229DNA repair and recombination protein RadA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878375.10.0DNA repair protein XRCC3 homolog isoform X2
TrEMBLA0A0E0G8D30.0A0A0E0G8D3_ORYNI; Uncharacterized protein
STRINGONIVA02G22870.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.13e-13zinc finger protein 2