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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G22690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 184aa MW: 19555.8 Da PI: 5.0431 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9e-19 | 23 | 73 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++k +g+Wv+eIr p g + r++lg+f++ae+Aa a++ a+++l+g ONIVA02G22690.1 23 PQYRGVRRRK-WGKWVSEIRQP---GTKVRIWLGSFDSAEMAAVAHDVAALRLRG 73 68*****998.**********8...325*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.0E-12 | 23 | 73 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-29 | 24 | 82 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-33 | 24 | 88 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.99E-20 | 24 | 83 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.683 | 24 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.55E-28 | 25 | 82 | No hit | No description |
PRINTS | PR00367 | 8.4E-10 | 25 | 36 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.4E-10 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MEQQPQQQQA AAPAMAAGGG GGPQYRGVRR RKWGKWVSEI RQPGTKVRIW LGSFDSAEMA 60 AVAHDVAALR LRGRDGAQLN FPGSVGWLPQ PATTDPVDIR AAAAEAAERV RREPALVSAA 120 ASAAPRRLEL GGGDGEFDEM ESPRLWAEMA EAMLLDPPKW GPDGSDGADG SSQSWAHGSL 180 WDGC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-15 | 22 | 86 | 3 | 67 | ATERF1 |
3gcc_A | 5e-15 | 22 | 86 | 3 | 67 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005808 | 0.0 | AP005808.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0038F20. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624476.1 | 1e-115 | ethylene-responsive transcription factor ERF027, partial | ||||
TrEMBL | Q6YVX0 | 1e-126 | Q6YVX0_ORYSJ; Putative AP2 domain-containing protein | ||||
STRING | OGLUM02G20980.1 | 1e-127 | (Oryza glumipatula) | ||||
STRING | ORUFI02G21740.1 | 1e-127 | (Oryza rufipogon) | ||||
STRING | OS02T0558700-00 | 1e-127 | (Oryza sativa) | ||||
STRING | ONIVA02G22690.1 | 1e-127 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2244 | 33 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 1e-20 | ERF family protein |