PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 301aa MW: 32156.8 Da PI: 6.3155

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G10840.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	106.5	2.1e-33	16	107	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 F+ k+y++++d++++ +i w +++nsfvv d+ f++++Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++ weF+h sF +g+++ll+ ONIVA02G10840.1 16 FVAKTYRMVDDPATDGVIAWGRDSNSFVVADPFAFSQTLLPAHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAHVSFLRGQTHLLR 100 9**************************************************************999.........************* PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 +i r++s ONIVA02G10840.1 101 RIVRRSS 107 **987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	5.9E-37	12	105	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	9.52E-33	12	105	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	4.6E-52	12	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.9E-29	16	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-17	16	39	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-17	54	66	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	55	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-17	67	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MTTTTTAEGG GGVAPFVAKT YRMVDDPATD GVIAWGRDSN SFVVADPFAF SQTLLPAHFK 60 HSNFSSFVRQ LNTYGFRKVD PDRWEFAHVS FLRGQTHLLR RIVRRSSGGG GAKRKEEAGG 120 CGGGGEAAAG DVDEESAVVA MEVARLRREQ REIEGRVAAM WRRVQETERR PKQMLAFLVK 180 VVGDPQVLRR LVDRDNTNAA PAASNADDAA VHHQVKRPRL LLDSSSTTTT HGDRHLVTAA 240 ADGFYAGGCG PEAAAAAAFV PDDALDFTGL YTGGDGFGNA VVDAGVDDPP AYAFPVVDSG 300 Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-23	7	105	20	129	Heat shock factor protein 1
5d5v_B	1e-23	7	105	20	129	Heat shock factor protein 1
5d5v_D	1e-23	7	105	20	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00379	DAP	Transfer from AT3G24520	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK106488	0.0	AK106488.1 Oryza sativa Japonica Group cDNA clone:002-105-A02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015623571.1	1e-180	heat stress transcription factor C-2a
Swissprot	Q6EUG4	0.0	HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBL	A0A0E0G3Z2	0.0	A0A0E0G3Z2_ORYNI; Uncharacterized protein
TrEMBL	A2X2Q3	0.0	A2X2Q3_ORYSI; Uncharacterized protein
STRING	ONIVA02G10840.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4471	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	1e-55	heat shock transcription factor C1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]