PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G09400.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 360aa    MW: 38237.9 Da    PI: 10.6131
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G09400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.41.7e-14171232162
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                      +ke kr +r+ +NR++A+  R+RKka++  Le kvk Le++N++L ++ ++l++e + l++ 
  ONIVA02G09400.1 171 DKEHKRLKRLLRNRVSAQQARERKKAYLNDLEVKVKDLEKKNSELEERFSTLQNENQMLRQI 232
                      5899*****************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.5E-15171235IPR004827Basic-leucine zipper domain
PfamPF001702.0E-13172233IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.461173236IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.8E-16175235No hitNo description
SuperFamilySSF579596.88E-13175233No hitNo description
CDDcd147043.55E-21176227No hitNo description
PROSITE patternPS000360178193IPR004827Basic-leucine zipper domain
SuperFamilySSF498995.3E-15271348IPR013320Concanavalin A-like lectin/glucanase domain
PfamPF001392.0E-15271343IPR001220Legume lectin domain
Gene3DG3DSA:2.60.120.2007.4E-15271345IPR013320Concanavalin A-like lectin/glucanase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0030246Molecular Functioncarbohydrate binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MATTRASLTD PLLPSPAARA PVKAKKLSWS MLHASSKDER RGQSGEAEAE ASGGVHANPS  60
SPARMQEQAT SSRPSSSERS SSSGGHHMEI KEGKEAPLRS LPLPFLDFHF TVPLSGMESD  120
EEIGRVPELG LEPGGASTSG RAAGGGGGGA ERAQSSTAQA SARRRGRSPA DKEHKRLKRL  180
LRNRVSAQQA RERKKAYLND LEVKVKDLEK KNSELEERFS TLQNENQMLR QILKNTTVSR  240
RGPVLLKIPK SGLREAAPAG CGGLREAEGD EKFVLNGFTA ANLSFDGMAT VTPNGLLMLT  300
NGTNQLKGHT FFPAPLQFHR TPNSTAMQSF STAFVIGIIS AFEDQGSGSP AAAGGSGRAA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040450.0AP004045.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1135_F06.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623711.11e-102transcription factor HY5
TrEMBLA0A0E0G3G20.0A0A0E0G3G2_ORYNI; Uncharacterized protein
STRINGONIVA02G09400.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140838111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.19e-38bZIP family protein