PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G08800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 300aa MW: 31153.4 Da PI: 10.1391 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.1 | 6.3e-08 | 101 | 126 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck Gd+C+FaHg+ ONIVA02G08800.1 101 KTRLCNKYNTAEGCKWGDKCHFAHGE 126 8***********************96 PP | |||||||
2 | zf-CCCH | 34.8 | 2.8e-11 | 266 | 291 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC +f + G C +GdrC+FaHg+ ONIVA02G08800.1 266 FKTKLCENFTK-GSCTFGDRCHFAHGE 291 69*********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.333 | 33 | 61 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3 | 33 | 60 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.8E-6 | 34 | 60 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-6 | 35 | 59 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-14 | 96 | 131 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-8 | 98 | 130 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.069 | 99 | 126 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.075 | 99 | 127 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.1E-5 | 101 | 126 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 2.53E-14 | 161 | 240 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.9E-9 | 169 | 239 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.676 | 170 | 234 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.8E-14 | 170 | 238 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 5.08E-13 | 172 | 234 | No hit | No description |
Pfam | PF00013 | 1.5E-10 | 172 | 236 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-16 | 263 | 296 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-9 | 265 | 295 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.2E-8 | 265 | 291 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.009 | 265 | 292 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.7E-9 | 266 | 291 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MEVGGRKRGK PDGANGAGGK RARESESFQT GVGSKSKPCT KFFSTSGCPF GEGCHFLHHF 60 PGGYQAVAKM TNLGGPAIAP PPGRMPMGNA VPDGPPTPTV KTRLCNKYNT AEGCKWGDKC 120 HFAHGERELG KPMLMDSSMP PPMGPRPTGH FAPPPMPSPA MSTPASFGAS ATAKISVDAS 180 LAGGIIGRGG VNTKQISRVT GAKLAIRDHE SDTNLKNIEL EGTFDQIKNA SAMVRELIVS 240 IGGGAPPQGK KPVGGSHRGG GPGSNFKTKL CENFTKGSCT FGDRCHFAHG ENELRKSAAA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242341 | 0.0 | AK242341.1 Oryza sativa Japonica Group cDNA, clone: J075199P17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626985.1 | 0.0 | zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q7F8R0 | 0.0 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A0E0G383 | 0.0 | A0A0E0G383_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0NB44 | 0.0 | A0A0E0NB44_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2X1Z0 | 0.0 | A2X1Z0_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI02G07250.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS02T0194200-01 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA02G08800.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1254 | 38 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 7e-49 | C3H family protein |