PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G08330.3
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 168aa    MW: 18082.3 Da    PI: 8.6662
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G08330.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.91e-071536224
              AP2  2 gykGVrwdkkrgrWvAeIrdpse 24
                     +++GVr ++ +gr++AeIrdp +
  ONIVA02G08330.3 15 RFRGVRKRP-WGRYAAEIRDPAK 36
                     69*******.**********854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.8E-51551IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-91539IPR001471AP2/ERF domain
PROSITE profilePS510329.9141539IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MRRGGAAEED AEAARFRGVR KRPWGRYAAE IRDPAKKARA KTNFPLSLPH AQPQLHHHHH  60
HHLTYPAAAV VAARPATSSL SSTVESFGTR PRPVLPPRPP PPPPILDGDC RSDCGSSASV  120
VDDDCADAAA SPSCRLPFQF DLNLPPGGGG GFGRAYDDEE LRLTALRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879040.12e-54ethylene-responsive transcription factor 3
TrEMBLA0A0E0G3121e-117A0A0E0G312_ORYNI; Uncharacterized protein
STRINGOGLUM02G06860.14e-57(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53170.12e-07ethylene response factor 8