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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G08330.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 168aa MW: 18082.3 Da PI: 8.6662 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 23.9 | 1e-07 | 15 | 36 | 2 | 24 |
AP2 2 gykGVrwdkkrgrWvAeIrdpse 24 +++GVr ++ +gr++AeIrdp + ONIVA02G08330.3 15 RFRGVRKRP-WGRYAAEIRDPAK 36 69*******.**********854 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.8E-5 | 15 | 51 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.6E-9 | 15 | 39 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 9.914 | 15 | 39 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MRRGGAAEED AEAARFRGVR KRPWGRYAAE IRDPAKKARA KTNFPLSLPH AQPQLHHHHH 60 HHLTYPAAAV VAARPATSSL SSTVESFGTR PRPVLPPRPP PPPPILDGDC RSDCGSSASV 120 VDDDCADAAA SPSCRLPFQF DLNLPPGGGG GFGRAYDDEE LRLTALRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879040.1 | 2e-54 | ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A0E0G312 | 1e-117 | A0A0E0G312_ORYNI; Uncharacterized protein | ||||
STRING | OGLUM02G06860.1 | 4e-57 | (Oryza glumipatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53170.1 | 2e-07 | ethylene response factor 8 |