PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G06550.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 27668.2 Da    PI: 8.199
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G06550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.72.1e-252978251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     ri+n   rqvtfskRr g++KKAeELS+LCdaev +++fs tgkl+ ++s
  ONIVA02G06550.1 29 RIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFAS 78
                     89*********************************************986 PP
2K-box40.21.4e-141101901898
            K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      +   a+Lk+e+ +    +R++ Ge+L++L++++Lq+Le+ Le++l ++ ++K++ +l++i+ l +k  +l een +L++++
  ONIVA02G06550.1 110 SSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEENLRLKEQV 190
                      66789**********99************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-332079IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.3192080IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002276IPR002100Transcription factor, MADS-box
CDDcd002651.35E-372293No hitNo description
PRINTSPR004045.8E-252242IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-292294IPR002100Transcription factor, MADS-box
PfamPF003191.8E-242976IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-254257IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-255778IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.015106196IPR002487Transcription factor, K-box
PfamPF014861.0E-12111190IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MAGGGGGGGR GEGEGRAATG KRERIAIRRI DNLAARQVTF SKRRRGLFKK AEELSILCDA  60
EVGLVVFSAT GKLFQFASTS MKQIIDRYNS HSKTLQRAEP SQLDLQGEDS STCARLKEEL  120
AETSLRLRQM RGEELHRLNV EQLQELEKSL ESGLGSVLKT KSKKILDEID GLERKRMQLI  180
EENLRLKEQV SRMSRMEEMQ PGPDSEIVYE EGQSSESVTN ASYPRPPPDN DYSSDTSLRL  240
GLSLFSSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-202292373MEF2C
5f28_B7e-202292373MEF2C
5f28_C7e-202292373MEF2C
5f28_D7e-202292373MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2422110.0AK242211.1 Oryza sativa Japonica Group cDNA, clone: J075171C16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630611.11e-178MADS-box transcription factor 47 isoform X2
SwissprotQ5K4R01e-160MAD47_ORYSJ; MADS-box transcription factor 47
TrEMBLA0A0E0G2B41e-177A0A0E0G2B4_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NQQ91e-177A0A0E0NQQ9_ORYRU; Uncharacterized protein
TrEMBLB8APQ41e-177B8APQ4_ORYSI; Uncharacterized protein
STRINGORUFI03G06210.11e-178(Oryza rufipogon)
STRINGONIVA02G06550.11e-178(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-68MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]