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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G05990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Trihelix | ||||||||
Protein Properties | Length: 372aa MW: 39214.8 Da PI: 4.0709 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 29.3 | 2.3e-09 | 71 | 149 | 1 | 71 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykkikegekkr 71 +Wt e+laL++ + +++ +r+ ++ ++W+ v++++ r rg r + +C+ +we l+ +y ++++e ++ ONIVA02G05990.1 71 EWTPAETLALVAEVAAVDDGWSRSVSAFQKWAIVAENLaasrgraaRGRGRGRAASECRRRWEALAAEYGVVRRWEVRG 149 5*******************************************9999999**********************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.922 | 72 | 136 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MAMDPDAAEW PCIIQALPAL PPSPSSTGVP RLPTMVQALP AATDPPPAAA RLRRGAEPPS 60 PRRTRSGGAP EWTPAETLAL VAEVAAVDDG WSRSVSAFQK WAIVAENLAA SRGRAARGRG 120 RGRAASECRR RWEALAAEYG VVRRWEVRGA GGYWRMSAAA RRKAGLPADF DAEVYGAMEA 180 LTLVEEALLA DATAGAGGAE IGEKSAAAAE VGEGDEVEAG EEDGNGDRGE VGEEDEGEIG 240 EDGEEDGNEM VEVEDDGNAD DEDTQPDGGN AAASDDLEVC ETGANNEGKK SQTDACELAN 300 KLQENAQHIH MLLKEEAGEN ENHNLAISSD SMETTRQKGD ELIKSLGGLV SYLNQFTDLI 360 KENGFENVVG MS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 123 | RAARGRGRGRA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005772 | 0.0 | AP005772.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0073A21. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626063.1 | 0.0 | trihelix transcription factor ASR3 isoform X1 | ||||
TrEMBL | A0A0E0G242 | 0.0 | A0A0E0G242_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA02G05990.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6353 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31270.1 | 7e-12 | sequence-specific DNA binding transcription factors |