PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G02170.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 456aa MW: 48621.9 Da PI: 8.7561

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G02170.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	67.8	1.8e-21	353	415	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elk+++rkq+NRe+ArrsR+RK+ae+eeL ++++L aeN++L+ ele++kke+++l s++ ONIVA02G02170.1 353 ERELKKQKRKQSNRESARRSRLRKQAECEELSVRADNLRAENSSLRAELERIKKEYEALLSHN 415 89*********************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	2.1E-29	110	205	IPR012900	G-box binding protein, multifunctional mosaic region
Pfam	PF16596	1.9E-20	232	335	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.9E-15	351	412	No hit	No description
SMART	SM00338	1.8E-18	353	417	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.0E-19	353	415	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.794	355	418	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.13E-10	356	413	No hit	No description
CDD	cd14702	6.90E-24	358	408	No hit	No description
PROSITE pattern	PS00036	0	360	375	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MDQAHAPFVG PTRQSPTPTH AAHRGRGPRT RTRPPISSSS SSSSPRFLSL PIHLLLLAAA 60 RRRNPLAGGG LAGVGRCLRR GRCCICLPVA RGKSERPCGL ALLEGRVRVM GTNDPGTPSK 120 ATKASEPEQS PATTSGTTAP VYPEWPGFQA YSAIPPHGFF PPPVAASPQA HPYMWGAQPM 180 VPPYGTPPPY MMYPPGTVYA HPSTPGVHPF NHYPMLANGN VETAGTAPGA SEINGKNELG 240 RTSGPSANGI TSHSESGSES ESEGSDANSQ NDSHSKENDV KEDGSSQNGI SHTALNQNMS 300 MAPTQTGVVI GGVAPTTNLN IGMDYWGAAG SSPVPAVHGK ASSGSVRGEQ WDERELKKQK 360 RKQSNRESAR RSRLRKQAEC EELSVRADNL RAENSSLRAE LERIKKEYEA LLSHNASLKE 420 KLEGNSDSIP YMNEQNDTNG THQKQQDSDA QPNDAP

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MDQAHAPFVG PTRQSPTPTH AAHRGRGPRT RTRPPISSSS SSSSPRFLSL PIHLLLLAAA  60
RRRNPLAGGG LAGVGRCLRR GRCCICLPVA RGKSERPCGL ALLEGRVRVM GTNDPGTPSK  120
ATKASEPEQS PATTSGTTAP VYPEWPGFQA YSAIPPHGFF PPPVAASPQA HPYMWGAQPM  180
VPPYGTPPPY MMYPPGTVYA HPSTPGVHPF NHYPMLANGN VETAGTAPGA SEINGKNELG  240
RTSGPSANGI TSHSESGSES ESEGSDANSQ NDSHSKENDV KEDGSSQNGI SHTALNQNMS  300
MAPTQTGVVI GGVAPTTNLN IGMDYWGAAG SSPVPAVHGK ASSGSVRGEQ WDERELKKQK  360
RKQSNRESAR RSRLRKQAEC EELSVRADNL RAENSSLRAE LERIKKEYEA LLSHNASLKE  420
KLEGNSDSIP YMNEQNDTNG THQKQQDSDA QPNDAP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	369	375	RRSRLRK
2	369	376	RRSRLRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK111901	0.0	AK111901.1 Oryza sativa Japonica Group cDNA clone:J023076M20, full insert sequence.
GenBank	AK112009	0.0	AK112009.1 Oryza sativa Japonica Group cDNA clone:006-209-B12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015626323.1	0.0	transcription factor HBP-1a
Refseq	XP_015626324.1	0.0	transcription factor HBP-1a
Swissprot	P23922	1e-145	HBP1A_WHEAT; Transcription factor HBP-1a
TrEMBL	A0A0E0G0J3	0.0	A0A0E0G0J3_ORYNI; Uncharacterized protein
STRING	ONIVA02G02170.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2147	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32150.1	9e-58	basic region/leucine zipper transcription factor 68

Publications ? help Back to Top
Tabata T,Nakayama T,Mikami K,Iwabuchi M HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat. EMBO J., 1991. 10(6): p. 1459-67 [PMID:2026143] Tabata T, et al. A protein that binds to a cis-acting element of wheat histone genes has a leucine zipper motif. Science, 1989. 245(4921): p. 965-7 [PMID:2772648] Mikami K, et al. Developmental and tissue-specific regulation of the gene for the wheat basic/leucine zipper protein HBP-1a(17) in transgenic Arabidopsis plants. Mol. Gen. Genet., 1995. 248(5): p. 573-82 [PMID:7476857] Nakayama T,Okanami M,Meshi T,Iwabuchi M Dissection of the wheat transcription factor HBP-1a(17) reveals a modular structure for the activation domain. Mol. Gen. Genet., 1997. 253(5): p. 553-61 [PMID:9065688] Okanami M,Meshi T,Tamai H,Iwabuchi M HALF-1, a bZIP-type protein, interacting with the wheat transcription factor HBP-1a contains a novel transcriptional activation domain. Genes Cells, 1996. 1(1): p. 87-99 [PMID:9078369]