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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
ONIVA01G50360.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
SRS |
| Protein Properties |
Length: 340aa MW: 34771.1 Da PI: 7.627 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ONIVA01G50360.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 230.4 | 3.2e-71 | 111 | 269 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97
g+a+CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerqq + +ass+ a+++a+aask++r l ++q+++s+t++s+a+++
ONIVA01G50360.1 111 GSATCQDCGNQAKKDCGHQRCRTCCKSRGFDCSTHVKSTWVPAARRRERQQLTGSASSSPATASAAAASKKPRLL--TSQTTTSHTSTSNATTP 202
7799*********************************************************************87..88999999********* PP
DUF702 98 keletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
++++t+s lP++v+++avfrcvrv+s+ddge+e+aYq++v+i+GhvfkG+LydqG+++
ONIVA01G50360.1 203 RSFDTTSshqdasfresLPRQVRAPAVFRCVRVTSIDDGEDEYAYQATVTINGHVFKGFLYDQGVDD 269
****99999*******************************************************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 340 aa
Download sequence Send
to blast |
MADVGMVVVT PAASFHHTHH HHHHHEAAAA AAAAAAAAAD PIFPLLSAGP CVLDPDKSAA 60
SGSAIQFWQP PPQPPSSAAG GNPNPSSSAF PYLKKPLPML DTGGGSSGSG GSATCQDCGN 120
QAKKDCGHQR CRTCCKSRGF DCSTHVKSTW VPAARRRERQ QLTGSASSSP ATASAAAASK 180
KPRLLTSQTT TSHTSTSNAT TPRSFDTTSS HQDASFRESL PRQVRAPAVF RCVRVTSIDD 240
GEDEYAYQAT VTINGHVFKG FLYDQGVDDG RGLAATSNDD STAGGVPNIS ELHLGGASIS 300
GNAMREGGSS MVHSDLYGGG GGSGGGPHIL GGSSYGNTMN
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK102444 | 0.0 | AK102444.1 Oryza sativa Japonica Group cDNA clone:J033093N15, full insert sequence. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.2 | 4e-61 | Lateral root primordium (LRP) protein-related |
