PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA01G46510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 727aa MW: 75885.3 Da PI: 7.0184 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.5 | 1.2e-18 | 537 | 633 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 +kvl++sdv+++gr+vlpkk ae h ++k++ ++ + +ed ++++W++++++ ++ks++y+l+ ++ +Fv++n+L+egDf+v++ ++ ++ ONIVA01G46510.1 537 QKVLKQSDVGSLGRIVLPKKEAEVHlpELKTRDGVSIPMEDiGTSQVWNMRYRFwpNNKSRMYLLE-NTGDFVRSNELQEGDFIVIY--SDiKS 627 79*************************999***********7777*******99777777777777.********************..66688 PP E..EEE CS B3 90 felvvk 95 ++++++ ONIVA01G46510.1 628 GKYLIR 633 877776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-27 | 527 | 642 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10015 | 1.29E-31 | 534 | 635 | No hit | No description |
SuperFamily | SSF101936 | 9.55E-22 | 535 | 629 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.278 | 536 | 638 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-16 | 536 | 638 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-15 | 537 | 632 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009657 | Biological Process | plastid organization | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001076 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 727 aa Download sequence Send to blast |
MDASAGSSAP HSHGNPGKQG GGGGGGGRGK APAAEIRGEA ARDDVFFADD TFPLLPDFPC 60 LSSPSSSTFS SSSSSNSSSA FTTAAGAGCG GEPSEPASAA DGFGELADID QLLDLASLSV 120 PWEAEQPLFP DDVGMMIEDA MSGQPHQADD CTGDGDTKAV MEAAGGGDDA GDACMEGSDA 180 PDDLPAFFME WLTSNREYIS ADDLRSIRLR RSTIEAAAAR LGGGRQGTMQ LLKLILTWVQ 240 NHHLQKKRPR TATDDGAASS DPQLPSPGAN PGYEFPSGGQ EMGSAAATSW MPYQAFTPPA 300 AYGGDAMYPG AAGPFPFQQS CSKSSVVVSS QPFSPPTAAA AGDMHASGGG NMAWPQQFAP 360 FPVSSTSSYT MPSVVPPPFT AGFPGQYSGG HAMCSPRLAG VEPSSTKEAR KKRMARQRRL 420 SCLQQQRSQQ LNLSQIHISG HPQEPSPRAA HSAPVTPSSA GCRSWGIWPP AAQIIQNPLS 480 NKPNPPPATS KQPKPSPEKP KPKPQAAATA GAESLQRSTA SEKRQAKTDK NLRFLLQKVL 540 KQSDVGSLGR IVLPKKEAEV HLPELKTRDG VSIPMEDIGT SQVWNMRYRF WPNNKSRMYL 600 LENTGDFVRS NELQEGDFIV IYSDIKSGKY LIRGVKVRRA AQEQGNSSGA VGKHKHGSPE 660 KPGVSSNTKA AGAEDGTGGD DSAEAAAAAA AGKADGGGCK GKSPHGVRRP RQEAAAAASM 720 SQMAVSI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 2e-38 | 532 | 644 | 1 | 110 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 2e-38 | 532 | 644 | 1 | 110 | B3 domain-containing transcription factor FUS3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may participate in abscisic acid-regulated gene expression during seed development. May be required for seed maturation and dormancy induction. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00083 | PBM | Transfer from AT3G24650 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK105441 | 0.0 | AK105441.1 Oryza sativa Japonica Group cDNA clone:001-125-A06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629311.1 | 0.0 | B3 domain-containing protein VP1 isoform X2 | ||||
Swissprot | P37398 | 0.0 | VIV_ORYSJ; B3 domain-containing protein VP1 | ||||
TrEMBL | A0A0E0FXG0 | 0.0 | A0A0E0FXG0_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G46510.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7529 | 34 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24650.1 | 3e-61 | B3 family protein |