 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
ONIVA01G46280.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
C2H2 |
| Protein Properties |
Length: 285aa MW: 30613.8 Da PI: 4.1498 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ONIVA01G46280.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 18.1 | 7.6e-06 | 259 | 282 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23
+ C++C+k Fs+ +L++H++ H
ONIVA01G46280.1 259 HACKYCSKAFSSDKSLRSHQKArH 282
67******************9888 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009414 | Biological Process | response to water deprivation |
| GO:0009651 | Biological Process | response to salt stress |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 285 aa
Download sequence Send
to blast |
MEFWGIEVKP GKAVSFNVDD ECVIHISQVA LGETKKAGSE NVVVSVKVDG KKTVIGNLSA 60
KNHPQFMCDL FIGNDFELSH SSKTTSVFLC DEDENMSDIC DIMGKHLGRP VAEEGKKDNS 120
DDGMDLSSSD DDDDSLDSSS SDDDDDESGD EDDGSDELPA EMESSEEEDG SDGQDESSSS 180
IVSTDEEDES DEEDEIPEKP ESSKLTAAGS TLSSGKKSKT ATHFGQKTGD KNTHPAKEDG 240
KTPAISKPNK ETPESSGTHA CKYCSKAFSS DKSLRSHQKA RHPAK
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP003416 | 1e-100 | AP003416.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0456E05. |
| GenBank | AP014957 | 1e-100 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012609 | 1e-100 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
