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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G44590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 191aa MW: 19911.1 Da PI: 7.9777 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.4 | 1.3e-16 | 19 | 69 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+Wv+eIr+p + r r +lg++ t+e Aa a++ a l+g ONIVA01G44590.1 19 CRYRGVRRRR-WGKWVSEIRVPGT---RERLWLGSYATPEAAAVAHDTAVYFLRG 69 78*****777.**********943...5*********************999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.5E-9 | 19 | 69 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-16 | 20 | 71 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.1E-25 | 20 | 85 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.2E-25 | 20 | 90 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.929 | 20 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-8 | 21 | 32 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.74E-13 | 28 | 85 | No hit | No description |
PRINTS | PR00367 | 1.0E-8 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MSRAECGGGG GGGEEEERCR YRGVRRRRWG KWVSEIRVPG TRERLWLGSY ATPEAAAVAH 60 DTAVYFLRGG AGDGGGGGAT LNFPERAAAT YGGGVARLSP RSVQRVASDA GMAADAQLVA 120 ARDAAPAPAP ATAYARPDHC AGATTARHDE LARRGMYGAH AHAAGANART SGERQLVCAE 180 EISVDDMEIL M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-11 | 10 | 84 | 4 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00158 | DAP | Transfer from AT1G22810 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645971.1 | 1e-68 | ethylene-responsive transcription factor ERF015 | ||||
Swissprot | Q9C9I8 | 4e-31 | ERF20_ARATH; Ethylene-responsive transcription factor ERF020 | ||||
TrEMBL | A0A0E0FWQ2 | 1e-131 | A0A0E0FWQ2_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G44590.1 | 1e-132 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6433 | 29 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22810.1 | 4e-24 | ERF family protein |
Publications ? help Back to Top | |||
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