PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G44590.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 191aa    MW: 19911.1 Da    PI: 7.9777
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G44590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-161969155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++y+GVr+++ +g+Wv+eIr+p +   r r +lg++ t+e Aa a++ a   l+g
  ONIVA01G44590.1 19 CRYRGVRRRR-WGKWVSEIRVPGT---RERLWLGSYATPEAAAVAHDTAVYFLRG 69
                     78*****777.**********943...5*********************999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-91969IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-162071IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.1E-252085IPR001471AP2/ERF domain
SMARTSM003807.2E-252090IPR001471AP2/ERF domain
PROSITE profilePS5103220.9292084IPR001471AP2/ERF domain
PRINTSPR003671.0E-82132IPR001471AP2/ERF domain
CDDcd000188.74E-132885No hitNo description
PRINTSPR003671.0E-84359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MSRAECGGGG GGGEEEERCR YRGVRRRRWG KWVSEIRVPG TRERLWLGSY ATPEAAAVAH  60
DTAVYFLRGG AGDGGGGGAT LNFPERAAAT YGGGVARLSP RSVQRVASDA GMAADAQLVA  120
ARDAAPAPAP ATAYARPDHC AGATTARHDE LARRGMYGAH AHAAGANART SGERQLVCAE  180
EISVDDMEIL M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-111084472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00158DAPTransfer from AT1G22810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645971.11e-68ethylene-responsive transcription factor ERF015
SwissprotQ9C9I84e-31ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A0E0FWQ21e-131A0A0E0FWQ2_ORYNI; Uncharacterized protein
STRINGONIVA01G44590.11e-132(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22810.14e-24ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]